data_6z18_residue ############################ # Computer software used # ############################ save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 6z18 _Structure_validation_residue.Date_analyzed 2020-08-29 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 1' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.429 -0.715 0 O4'-C1'-C2' 107.762 0.973 . 0.0 '__' . 36.32 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 2' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.416 -1.484 0 OP1-P-OP2 123.058 2.305 . 0.895 1a . 37.53 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.308 0 OP1-P-OP2 124.205 3.07 . 0.939 1a . 42.49 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O3'--C3' 1.403 -1.416 0 OP1-P-OP2 122.253 1.769 . 0.597 1a . 46.11 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 5' ' ' LV2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.414 -1.62 0 N19-C1'-C2' 110.61 -1.743 . 0.644 1c . 47.41 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 7' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.41 -1.868 0 N19-C1'-C2' 109.588 -2.383 . 0.645 1a . 50.56 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.305 0 O5'-C5'-C4' 113.486 2.347 . 0.917 1a . 56.46 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 9' ' ' ' G' . . . . . 0.462 ' N2 ' ' O2 ' ' B' ' 2' ' ' ' C' . . . . . . . . 0 O5'--C5' 1.421 -1.157 0 O4'-C1'-N19 109.821 1.621 . 0.89 1a . 76.2 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 10' ' ' ' G' . . . . . 0.517 ' N1 ' ' N3 ' ' B' ' 1' ' ' ' C' . . . . . . . . 0 O5'--C5' 1.419 -1.326 0 O5'-P-OP1 113.143 1.739 . 0.582 1a . 84.6 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 1' ' ' ' C' . . . . . 0.517 ' N3 ' ' N1 ' ' A' ' 10' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.418 -1.367 0 C2'-C3'-O3' 114.443 1.23 . 0.0 '__' . 83.83 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 2' ' ' ' C' . . . . . 0.462 ' O2 ' ' N2 ' ' A' ' 9' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.425 -0.966 0 O4'-C4'-C3' 103.063 -1.74 . 0.725 1a . 89.77 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.606 1.285 0 O5'-C5'-C4' 113.696 2.497 . 0.378 1a . 89.56 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.603 1.03 0 O5'-C5'-C4' 113.961 2.686 . 0.654 1a . 63.78 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 5' ' ' LV2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.415 -1.593 0 N19-C1'-C2' 110.355 -1.903 . 0.261 1a . 47.36 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 7' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.506 -1.695 0 N19-C1'-C2' 110.205 -1.997 . 0.875 1a . 41.84 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.398 0 N19-C1'-C2' 110.098 -2.064 . 0.934 1a . 41.47 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 9' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.417 -1.435 0 OP1-P-OP2 117.252 -1.566 . 0.747 1a . 40.92 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 10' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.411 -1.813 0 O4'-C4'-C3' 103.448 -1.465 . 0.68 1a . 44.13 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 101' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 102' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 103' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 1' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.429 -0.715 0 O4'-C1'-C2' 107.762 0.973 . 0.0 '__' . 36.32 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 2' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.416 -1.484 0 OP1-P-OP2 123.058 2.305 . 0.895 1a . 37.53 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.308 0 OP1-P-OP2 124.205 3.07 . 0.939 1a . 42.49 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O3'--C3' 1.403 -1.416 0 OP1-P-OP2 122.253 1.769 . 0.597 1a . 46.11 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 5' ' ' LV2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.414 -1.62 0 N19-C1'-C2' 110.61 -1.743 . 0.644 1c . 47.41 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 7' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.41 -1.868 0 N19-C1'-C2' 109.588 -2.383 . 0.645 1a . 50.56 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.305 0 O5'-C5'-C4' 113.486 2.347 . 0.917 1a . 56.46 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 9' ' ' ' G' . . . . . 0.428 " H2'" ' C8 ' ' A' ' 10' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.421 -1.157 0 O4'-C1'-N19 109.821 1.621 . 0.89 1a . 76.2 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 10' ' ' ' G' . . . . . 0.428 ' C8 ' " H2'" ' A' ' 9' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.419 -1.326 0 O5'-P-OP1 113.143 1.739 . 0.582 1a . 84.6 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 1' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.367 0 C2'-C3'-O3' 114.443 1.23 . 0.0 '__' . 83.83 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 2' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.425 -0.966 0 O4'-C4'-C3' 103.063 -1.74 . 0.725 1a . 89.77 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.606 1.285 0 O5'-C5'-C4' 113.696 2.497 . 0.378 1a . 89.56 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.603 1.03 0 O5'-C5'-C4' 113.961 2.686 . 0.654 1a . 63.78 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 5' ' ' LV2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.415 -1.593 0 N19-C1'-C2' 110.355 -1.903 . 0.261 1a . 47.36 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 7' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.506 -1.695 0 N19-C1'-C2' 110.205 -1.997 . 0.875 1a . 41.84 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.398 0 N19-C1'-C2' 110.098 -2.064 . 0.934 1a . 41.47 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 9' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.417 -1.435 0 OP1-P-OP2 117.252 -1.566 . 0.747 1a . 40.92 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 10' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.411 -1.813 0 O4'-C4'-C3' 103.448 -1.465 . 0.68 1a . 44.13 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 101' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 102' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 103' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 1' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.429 -0.715 0 O4'-C1'-C2' 107.762 0.973 . 0.0 '__' . 36.32 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 2' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.416 -1.484 0 OP1-P-OP2 123.058 2.305 . 0.895 1a . 37.53 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.308 0 OP1-P-OP2 124.205 3.07 . 0.939 1a . 42.49 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O3'--C3' 1.403 -1.416 0 OP1-P-OP2 122.253 1.769 . 0.597 1a . 46.11 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 5' ' ' LV2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.414 -1.62 0 N19-C1'-C2' 110.61 -1.743 . 0.644 1c . 47.41 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 7' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.41 -1.868 0 N19-C1'-C2' 109.588 -2.383 . 0.645 1a . 50.56 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.305 0 O5'-C5'-C4' 113.486 2.347 . 0.917 1a . 56.46 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 9' ' ' ' G' . . . . . 0.428 " H2'" ' C8 ' ' A' ' 10' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.421 -1.157 0 O4'-C1'-N19 109.821 1.621 . 0.89 1a . 76.2 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 10' ' ' ' G' . . . . . 0.428 ' C8 ' " H2'" ' A' ' 9' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.419 -1.326 0 O5'-P-OP1 113.143 1.739 . 0.582 1a . 84.6 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 1' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.367 0 C2'-C3'-O3' 114.443 1.23 . 0.0 '__' . 83.83 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 2' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.425 -0.966 0 O4'-C4'-C3' 103.063 -1.74 . 0.725 1a . 89.77 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.606 1.285 0 O5'-C5'-C4' 113.696 2.497 . 0.378 1a . 89.56 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.603 1.03 0 O5'-C5'-C4' 113.961 2.686 . 0.654 1a . 63.78 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 5' ' ' LV2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.415 -1.593 0 N19-C1'-C2' 110.355 -1.903 . 0.261 1a . 47.36 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 7' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.506 -1.695 0 N19-C1'-C2' 110.205 -1.997 . 0.875 1a . 41.84 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.398 0 N19-C1'-C2' 110.098 -2.064 . 0.934 1a . 41.47 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 9' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.417 -1.435 0 OP1-P-OP2 117.252 -1.566 . 0.747 1a . 40.92 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 10' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.411 -1.813 0 O4'-C4'-C3' 103.448 -1.465 . 0.68 1a . 44.13 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 101' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 102' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 103' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_