data_6dy9_residue ############################ # Computer software used # ############################ save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 6dy9 _Structure_validation_residue.Date_analyzed 2019-01-18 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 1' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.543 0 C2'-C3'-O3' 113.693 1.146 . . . . 70.83 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.432 0.894 0 C4'-C3'-C2' 101.148 -2.052 . . . . 75.48 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.431 0.872 0 C4'-C3'-C2' 101.27 -1.93 . . . . 82.37 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 4' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.602 -0.427 0 O4'-C1'-C2' 107.077 0.888 . . . . 74.4 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 5' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.597 -0.83 0 O4'-C4'-C3' 104.254 -1.346 . . . . 65.04 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 6' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.599 -0.644 0 O4'-C4'-C3' 104.196 -1.404 . . . . 66.15 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.428 0.592 0 O4'-C4'-C3' 104.183 -1.417 . . . . 69.07 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 8' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C4'--C3' 1.523 -0.487 0 C3'-C2'-C1' 105.025 1.661 . . . . 70.61 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 9' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.534 0 C5'-C4'-C3' 118.425 2.483 . . . . 79.11 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 10' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.6 -0.559 0 C4'-C3'-C2' 102.063 -1.137 . . . . 78.97 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 11' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.429 0.728 0 C4'-C3'-C2' 101.363 -1.837 . . . . 68.55 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 12' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.597 -0.819 0 C4'-C3'-C2' 102.169 -1.031 . . . . 59.44 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 13' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.43 0.752 0 C4'-C3'-C2' 101.588 -1.612 . . . . 57.73 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 14' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.429 0.708 0 C4'-C3'-C2' 101.554 -1.646 . . . . 61.4 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 15' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.574 0 C4'-C3'-C2' 102.108 -1.092 . . . . 60.72 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 16' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.6 -0.623 0 O4'-C1'-C2' 107.191 0.992 . . . . 61.72 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 101' ' ' ' ZN' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 101' ' ' ' ZN' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 201' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 1' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.543 0 C2'-C3'-O3' 113.693 1.146 . . . . 70.829999999999998 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.432 0.894 0 C4'-C3'-C2' 101.148 -2.052 . . . . 75.480000000000004 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.431 0.872 0 C4'-C3'-C2' 101.27 -1.93 . . . . 82.370000000000005 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 4' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.602 -0.427 0 O4'-C1'-C2' 107.077 0.888 . . . . 74.400000000000006 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 5' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.597 -0.83 0 O4'-C4'-C3' 104.254 -1.346 . . . . 65.040000000000006 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 6' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.599 -0.644 0 O4'-C4'-C3' 104.196 -1.404 . . . . 66.150000000000006 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.428 0.592 0 O4'-C4'-C3' 104.183 -1.417 . . . . 69.069999999999993 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 8' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C4'--C3' 1.523 -0.487 0 C3'-C2'-C1' 105.025 1.661 . . . . 70.609999999999999 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 9' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.534 0 C5'-C4'-C3' 118.425 2.483 . . . . 79.109999999999999 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 10' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.6 -0.559 0 C4'-C3'-C2' 102.063 -1.137 . . . . 78.969999999999999 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 11' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.429 0.728 0 C4'-C3'-C2' 101.363 -1.837 . . . . 68.549999999999997 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 12' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.597 -0.819 0 C4'-C3'-C2' 102.169 -1.031 . . . . 59.439999999999998 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 13' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.43 0.752 0 C4'-C3'-C2' 101.588 -1.612 . . . . 57.729999999999997 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 14' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.429 0.708 0 C4'-C3'-C2' 101.554 -1.646 . . . . 61.399999999999999 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 15' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.574 0 C4'-C3'-C2' 102.108 -1.092 . . . . 60.719999999999999 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 16' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.6 -0.623 0 O4'-C1'-C2' 107.191 0.992 . . . . 61.719999999999999 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 101' ' ' ' ZN' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 101' ' ' ' ZN' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 201' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 1' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.543 0 C2'-C3'-O3' 113.693 1.146 . . . . 70.83 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.432 0.894 0 C4'-C3'-C2' 101.148 -2.052 . . . . 75.48 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.431 0.872 0 C4'-C3'-C2' 101.27 -1.93 . . . . 82.37 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 4' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.602 -0.427 0 O4'-C1'-C2' 107.077 0.888 . . . . 74.4 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 5' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.597 -0.83 0 O4'-C4'-C3' 104.254 -1.346 . . . . 65.04 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 6' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.599 -0.644 0 O4'-C4'-C3' 104.196 -1.404 . . . . 66.15 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.428 0.592 0 O4'-C4'-C3' 104.183 -1.417 . . . . 69.07 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 8' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C4'--C3' 1.523 -0.487 0 C3'-C2'-C1' 105.025 1.661 . . . . 70.61 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 9' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.534 0 C5'-C4'-C3' 118.425 2.483 . . . . 79.11 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 10' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.6 -0.559 0 C4'-C3'-C2' 102.063 -1.137 . . . . 78.97 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 11' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.429 0.728 0 C4'-C3'-C2' 101.363 -1.837 . . . . 68.55 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 12' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.597 -0.819 0 C4'-C3'-C2' 102.169 -1.031 . . . . 59.44 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 13' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.43 0.752 0 C4'-C3'-C2' 101.588 -1.612 . . . . 57.73 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 14' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.429 0.708 0 C4'-C3'-C2' 101.554 -1.646 . . . . 61.4 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 15' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.427 0.574 0 C4'-C3'-C2' 102.108 -1.092 . . . . 60.72 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 16' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.6 -0.623 0 O4'-C1'-C2' 107.191 0.992 . . . . 61.72 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 101' ' ' ' ZN' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 101' ' ' ' ZN' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 201' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_