data_2nef_oneline save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_oneline _Structure_validation_oneline.Sf_category structure_validation _Structure_validation_oneline.Sf_framecode Structure_validation_oneline _Structure_validation_oneline.Entry_ID ? _Structure_validation_oneline.List_ID 1 _Structure_validation_oneline.PDB_accession_code 2nef _Structure_validation_oneline.Date_analyzed 2016-10-10 loop_ _Oneline_analysis_software.Software_ID _Oneline_analysis_software.Software_label _Oneline_analysis_software.Method_ID _Oneline_analysis_software.Method_label _Oneline_analysis_software.Entry_ID _Oneline_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Oneline_analysis.ID _Oneline_analysis.PDB_model_num _Oneline_analysis.Hydrogen_positions _Oneline_analysis.MolProbity_flips _Oneline_analysis.Cyrange_core_flag _Oneline_analysis.Assembly_ID _Oneline_analysis.Macromolecule_types _Oneline_analysis.Clashscore _Oneline_analysis.Clashscore_B_under_40 _Oneline_analysis.Cbeta_outlier_count _Oneline_analysis.Cbeta_count _Oneline_analysis.Rotamer_outlier_count _Oneline_analysis.Rotamer_count _Oneline_analysis.Ramachandran_outlier_count _Oneline_analysis.Ramachandran_allowed_count _Oneline_analysis.Ramachandran_favored_count _Oneline_analysis.Ramachandran_count _Oneline_analysis.Bond_outlier_count _Oneline_analysis.Bond_count _Oneline_analysis.Percent_bond_outlier _Oneline_analysis.Percent_residues_with_bond_outlier _Oneline_analysis.Angle_outlier_count _Oneline_analysis.Angle_count _Oneline_analysis.Percent_angle_outlier _Oneline_analysis.Percent_residues_with_angle_outlier _Oneline_analysis.MolProbity_score _Oneline_analysis.RNA_phosphate_perpendicular_outlier_count _Oneline_analysis.RNA_phosphate_perpendicular_count _Oneline_analysis.RNA_suite_outlier_count _Oneline_analysis.RNA_suite_count _Oneline_analysis.Entry_ID _Oneline_analysis.Structure_validation_oneline_list_ID . 001 nuclear build core . protein 24.01 24.01 0 79 6 75 4 20 54 78 0 333 0.00 0.00 0 411 0.00 0.00 3.40 0 0 0 0 . 1 . 002 nuclear build core . protein 28.25 28.25 0 79 6 75 5 15 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.42 0 0 0 0 . 1 . 003 nuclear build core . protein 19.07 19.07 0 79 5 75 6 17 55 78 0 333 0.00 0.00 0 411 0.00 0.00 3.24 0 0 0 0 . 1 . 004 nuclear build core . protein 33.90 33.90 0 79 12 75 4 18 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.75 0 0 0 0 . 1 . 005 nuclear build core . protein 20.48 20.48 0 79 8 75 4 23 51 78 0 333 0.00 0.00 0 411 0.00 0.00 3.46 0 0 0 0 . 1 . 006 nuclear build core . protein 25.42 25.42 0 79 4 75 5 16 57 78 0 333 0.00 0.00 0 411 0.00 0.00 3.26 0 0 0 0 . 1 . 007 nuclear build core . protein 28.95 28.95 0 79 7 75 5 18 55 78 0 333 0.00 0.00 0 411 0.00 0.00 3.52 0 0 0 0 . 1 . 008 nuclear build core . protein 33.90 33.90 0 79 8 75 5 17 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.62 0 0 0 0 . 1 . 009 nuclear build core . protein 30.37 30.37 0 79 8 75 4 18 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.57 0 0 0 0 . 1 . 010 nuclear build core . protein 22.60 22.60 0 79 5 75 4 19 55 78 0 333 0.00 0.00 0 411 0.00 0.00 3.31 0 0 0 0 . 1 . 011 nuclear build core . protein 28.95 28.95 0 79 9 75 4 18 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.59 0 0 0 0 . 1 . 012 nuclear build core . protein 31.07 31.07 0 79 5 75 7 13 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.40 0 0 0 0 . 1 . 013 nuclear build core . protein 34.60 34.60 0 79 9 75 4 20 54 78 0 333 0.00 0.00 0 411 0.00 0.00 3.69 0 0 0 0 . 1 . 014 nuclear build core . protein 30.37 30.37 0 79 6 75 7 18 53 78 0 333 0.00 0.00 0 411 0.00 0.00 3.51 0 0 0 0 . 1 . 015 nuclear build core . protein 19.07 19.07 0 79 10 75 4 13 61 78 0 333 0.00 0.00 0 411 0.00 0.00 3.39 0 0 0 0 . 1 . 016 nuclear build core . protein 28.25 28.25 0 79 8 75 4 14 60 78 0 333 0.00 0.00 0 411 0.00 0.00 3.49 0 0 0 0 . 1 . 017 nuclear build core . protein 26.13 26.13 0 79 10 75 6 15 57 78 0 333 0.00 0.00 0 411 0.00 0.00 3.57 0 0 0 0 . 1 . 018 nuclear build core . protein 27.54 27.54 0 79 5 75 5 14 59 78 0 333 0.00 0.00 0 411 0.00 0.00 3.34 0 0 0 0 . 1 . 019 nuclear build core . protein 24.01 24.01 0 79 5 75 3 19 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.32 0 0 0 0 . 1 . 020 nuclear build core . protein 33.90 33.90 0 79 7 75 5 21 52 78 0 333 0.00 0.00 0 411 0.00 0.00 3.62 0 0 0 0 . 1 . 021 nuclear build core . protein 37.43 37.43 0 79 7 75 6 14 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.59 0 0 0 0 . 1 . 022 nuclear build core . protein 25.42 25.42 0 79 7 75 3 20 55 78 0 333 0.00 0.00 0 411 0.00 0.00 3.47 0 0 0 0 . 1 . 023 nuclear build core . protein 26.82 26.82 0 79 4 75 5 19 54 78 0 333 0.00 0.00 0 411 0.00 0.00 3.32 0 0 0 0 . 1 . 024 nuclear build core . protein 31.78 31.78 0 79 5 75 3 19 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.44 0 0 0 0 . 1 . 025 nuclear build core . protein 22.60 22.60 0 79 9 75 3 16 59 78 0 333 0.00 0.00 0 411 0.00 0.00 3.45 0 0 0 0 . 1 . 026 nuclear build core . protein 30.37 30.37 0 79 10 75 2 23 53 78 0 333 0.00 0.00 0 411 0.00 0.00 3.68 0 0 0 0 . 1 . 027 nuclear build core . protein 28.23 28.23 0 79 6 75 5 14 59 78 0 333 0.00 0.00 0 411 0.00 0.00 3.41 0 0 0 0 . 1 . 028 nuclear build core . protein 40.96 40.96 0 79 7 75 3 18 57 78 0 333 0.00 0.00 0 411 0.00 0.00 3.64 0 0 0 0 . 1 . 029 nuclear build core . protein 25.42 25.42 0 79 9 75 4 16 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.51 0 0 0 0 . 1 . 030 nuclear build core . protein 28.95 28.95 0 79 8 75 5 20 53 78 0 333 0.00 0.00 0 411 0.00 0.00 3.59 0 0 0 0 . 1 . 031 nuclear build core . protein 29.66 29.66 0 79 6 75 2 16 60 78 0 333 0.00 0.00 0 411 0.00 0.00 3.42 0 0 0 0 . 1 . 032 nuclear build core . protein 24.01 24.01 0 79 2 75 7 15 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.02 0 0 0 0 . 1 . 033 nuclear build core . protein 31.07 31.07 0 79 11 75 4 16 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.66 0 0 0 0 . 1 . 034 nuclear build core . protein 32.49 32.49 0 79 8 75 2 17 59 78 0 333 0.00 0.00 0 411 0.00 0.00 3.56 0 0 0 0 . 1 . 035 nuclear build core . protein 31.07 31.07 0 79 10 75 3 17 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.63 0 0 0 0 . 1 . 036 nuclear build core . protein 29.66 29.66 0 79 13 75 4 18 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.72 0 0 0 0 . 1 . 037 nuclear build core . protein 25.42 25.42 0 79 6 75 8 17 53 78 0 333 0.00 0.00 0 411 0.00 0.00 3.44 0 0 0 0 . 1 . 038 nuclear build core . protein 27.54 27.54 0 79 7 75 5 15 58 78 0 333 0.00 0.00 0 411 0.00 0.00 3.46 0 0 0 0 . 1 . 039 nuclear build core . protein 41.67 41.67 0 79 8 75 6 20 52 78 0 333 0.00 0.00 0 411 0.00 0.00 3.75 0 0 0 0 . 1 . 040 nuclear build core . protein 30.37 30.37 0 79 9 75 5 17 56 78 0 333 0.00 0.00 0 411 0.00 0.00 3.61 0 0 0 0 . 1 . 001 nuclear build full . protein 26.47 26.47 0 128 8 120 10 36 88 134 0 543 0.00 0.00 0 677 0.00 0.00 3.41 0 0 0 0 . 1 . 002 nuclear build full . protein 25.57 25.57 0 128 7 120 15 35 84 134 0 543 0.00 0.00 0 677 0.00 0.00 3.38 0 0 0 0 . 1 . 003 nuclear build full . protein 22.43 22.43 0 128 9 120 16 35 83 134 0 543 0.00 0.00 0 677 0.00 0.00 3.41 0 0 0 0 . 1 . 004 nuclear build full . protein 30.06 30.06 0 128 13 120 11 35 88 134 0 543 0.00 0.00 0 677 0.00 0.00 3.62 0 0 0 0 . 1 . 005 nuclear build full . protein 20.19 20.19 0 128 11 120 16 34 84 134 0 543 0.00 0.00 0 677 0.00 0.00 3.43 0 0 0 0 . 1 . 006 nuclear build full . protein 21.98 21.98 0 128 5 120 12 30 92 134 0 543 0.00 0.00 0 677 0.00 0.00 3.16 0 0 0 0 . 1 . 007 nuclear build full . protein 31.40 31.40 0 128 8 120 19 29 86 134 0 543 0.00 0.00 0 677 0.00 0.00 3.49 0 0 0 0 . 1 . 008 nuclear build full . protein 27.82 27.82 0 128 8 120 14 30 90 134 0 543 0.00 0.00 0 677 0.00 0.00 3.42 0 0 0 0 . 1 . 009 nuclear build full . protein 30.06 30.06 0 128 11 120 17 37 80 134 0 543 0.00 0.00 0 677 0.00 0.00 3.61 0 0 0 0 . 1 . 010 nuclear build full . protein 23.78 23.78 0 128 8 120 9 34 91 134 0 543 0.00 0.00 0 677 0.00 0.00 3.35 0 0 0 0 . 1 . 011 nuclear build full . protein 27.82 27.82 0 128 12 120 16 33 85 134 0 543 0.00 0.00 0 677 0.00 0.00 3.58 0 0 0 0 . 1 . 012 nuclear build full . protein 34.54 34.54 0 128 14 120 16 27 91 134 0 543 0.00 0.00 0 677 0.00 0.00 3.69 0 0 0 0 . 1 . 013 nuclear build full . protein 33.65 33.65 0 128 12 120 17 34 83 134 0 543 0.00 0.00 0 677 0.00 0.00 3.67 0 0 0 0 . 1 . 014 nuclear build full . protein 26.47 26.47 0 128 7 120 17 34 83 134 0 543 0.00 0.00 0 677 0.00 0.00 3.39 0 0 0 0 . 1 . 015 nuclear build full . protein 19.29 19.29 0 128 13 120 9 29 96 134 0 543 0.00 0.00 0 677 0.00 0.00 3.39 0 0 0 0 . 1 . 016 nuclear build full . protein 30.51 30.51 0 128 11 120 15 28 91 134 0 543 0.00 0.00 0 677 0.00 0.00 3.56 0 0 0 0 . 1 . 017 nuclear build full . protein 25.12 25.12 0 128 10 120 21 27 86 134 0 543 0.00 0.00 0 677 0.00 0.00 3.48 0 0 0 0 . 1 . 018 nuclear build full . protein 24.23 24.23 0 128 6 120 13 32 89 134 0 543 0.00 0.00 0 677 0.00 0.00 3.28 0 0 0 0 . 1 . 019 nuclear build full . protein 27.37 27.37 0 128 8 120 9 33 92 134 0 543 0.00 0.00 0 677 0.00 0.00 3.40 0 0 0 0 . 1 . 020 nuclear build full . protein 37.24 37.24 0 128 8 120 12 40 82 134 0 543 0.00 0.00 0 677 0.00 0.00 3.58 0 0 0 0 . 1 . 021 nuclear build full . protein 44.41 44.41 0 128 15 120 20 28 86 134 0 543 0.00 0.00 0 677 0.00 0.00 3.84 0 0 0 0 . 1 . 022 nuclear build full . protein 28.26 28.26 0 128 9 120 11 41 82 134 0 543 0.00 0.00 0 677 0.00 0.00 3.51 0 0 0 0 . 1 . 023 nuclear build full . protein 27.82 27.82 0 128 5 120 15 31 88 134 0 543 0.00 0.00 0 677 0.00 0.00 3.28 0 0 0 0 . 1 . 024 nuclear build full . protein 30.51 30.51 0 128 10 120 12 30 92 134 0 543 0.00 0.00 0 677 0.00 0.00 3.52 0 0 0 0 . 1 . 025 nuclear build full . protein 20.64 20.64 0 128 9 120 10 33 91 134 0 543 0.00 0.00 0 677 0.00 0.00 3.33 0 0 0 0 . 1 . 026 nuclear build full . protein 29.61 29.61 0 128 15 120 12 40 82 134 0 543 0.00 0.00 0 677 0.00 0.00 3.70 0 0 0 0 . 1 . 027 nuclear build full . protein 30.49 30.49 0 128 10 120 16 31 87 134 0 543 0.00 0.00 0 677 0.00 0.00 3.55 0 0 0 0 . 1 . 028 nuclear build full . protein 39.48 39.48 0 128 11 120 12 36 86 134 0 543 0.00 0.00 0 677 0.00 0.00 3.69 0 0 0 0 . 1 . 029 nuclear build full . protein 22.88 22.88 0 128 11 120 14 35 85 134 0 543 0.00 0.00 0 677 0.00 0.00 3.47 0 0 0 0 . 1 . 030 nuclear build full . protein 30.06 30.06 0 128 13 120 17 36 81 134 0 543 0.00 0.00 0 677 0.00 0.00 3.66 0 0 0 0 . 1 . 031 nuclear build full . protein 26.47 26.47 0 128 9 120 9 28 97 134 0 543 0.00 0.00 0 677 0.00 0.00 3.40 0 0 0 0 . 1 . 032 nuclear build full . protein 25.57 25.57 0 128 6 120 20 25 89 134 0 543 0.00 0.00 0 677 0.00 0.00 3.30 0 0 0 0 . 1 . 033 nuclear build full . protein 30.51 30.51 0 128 17 120 12 32 90 134 0 543 0.00 0.00 0 677 0.00 0.00 3.71 0 0 0 0 . 1 . 034 nuclear build full . protein 32.30 32.30 0 128 8 120 15 34 85 134 0 543 0.00 0.00 0 677 0.00 0.00 3.51 0 0 0 0 . 1 . 035 nuclear build full . protein 27.82 27.82 0 128 11 120 10 32 92 134 0 543 0.00 0.00 0 677 0.00 0.00 3.51 0 0 0 0 . 1 . 036 nuclear build full . protein 25.12 25.12 0 128 15 120 14 30 90 134 0 543 0.00 0.00 0 677 0.00 0.00 3.59 0 0 0 0 . 1 . 037 nuclear build full . protein 23.33 23.33 0 128 7 120 14 30 90 134 0 543 0.00 0.00 0 677 0.00 0.00 3.31 0 0 0 0 . 1 . 038 nuclear build full . protein 23.33 23.33 0 128 11 120 13 32 89 134 0 543 0.00 0.00 0 677 0.00 0.00 3.46 0 0 0 0 . 1 . 039 nuclear build full . protein 33.65 33.65 0 128 11 120 17 33 84 134 0 543 0.00 0.00 0 677 0.00 0.00 3.64 0 0 0 0 . 1 . 040 nuclear build full . protein 26.02 26.02 0 128 11 120 14 33 87 134 0 543 0.00 0.00 0 677 0.00 0.00 3.52 0 0 0 0 . 1 stop_ save_