data_2lny_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 2lny _Structure_validation_residue.Date_analyzed 2016-10-07 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' MET . . . . . . . . . . . . . 39.6 tpp . . . . . 0 N--CA 1.47 0.569 0 CA-C-O 115.477 -2.201 . . . . 0.0 111.793 . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ALA . . . . . . . . . . . . . . . -139.84 61.34 1.54 Allowed 'General case' 0 N--CA 1.477 0.905 1 O-C-N 129.939 4.524 . . . . 0.0 109.655 177.096 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ALA . . . . . . . . . . . . . . . -88.47 74.69 8.51 Favored 'General case' 0 N--CA 1.479 0.998 1 CA-C-O 130.023 4.725 . . . . 0.0 109.099 173.801 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' VAL . . . . . . . . . . . . . 22.6 m -108.59 77.8 0.46 Allowed 'Isoleucine or valine' 0 C--N 1.322 -0.615 0 O-C-N 117.049 -3.532 . . . . 0.0 109.338 -176.322 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ALA . . . . . . . . . . . . . . . -114.31 41.2 2.34 Favored 'General case' 0 N--CA 1.469 0.475 0 CA-C-N 109.28 -3.6 . . . . 0.0 106.51 -173.52 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' GLY . . . . . . . . . . . . . . . 59.8 -72.97 0.01 OUTLIER Glycine 0 N--CA 1.477 1.395 1 C-N-CA 130.819 4.057 . . . . 0.0 118.521 176.592 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' LEU . . . . . . . . . . . . . 43.5 mt -73.66 -25.35 60.23 Favored 'General case' 0 C--N 1.327 -0.411 0 C-N-CA 117.292 -1.763 . . . . 0.0 112.217 178.309 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' TYR . . . . . . . . . . . . . 47.0 t80 -120.87 94.43 4.35 Favored 'General case' 0 N--CA 1.476 0.837 0 N-CA-C 107.021 -1.474 . . . . 0.0 107.021 164.302 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' GLY . . . . . . . . . . . . . . . -98.92 73.32 0.54 Allowed Glycine 0 N--CA 1.472 1.069 0 C-N-CA 128.717 3.056 . . . . 0.0 119.041 174.464 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' LEU . . . . . . . . . . . . . 0.8 OUTLIER -114.58 97.14 6.11 Favored 'General case' 0 CA--C 1.539 0.556 0 CA-C-O 124.876 2.274 . . . . 0.0 116.404 -176.984 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' GLY . . . . . . . . . . . . . . . -119.47 129.87 8.24 Favored Glycine 0 N--CA 1.472 1.09 0 CA-C-N 112.44 -2.163 . . . . 0.0 111.618 -177.58 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 12' ' ' GLU . . . . . . . . . . . . . 30.0 tt0 -166.28 119.93 1.1 Allowed 'General case' 0 N--CA 1.469 0.507 0 N-CA-C 119.315 3.08 . . . . 0.0 119.315 -179.853 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 13' ' ' ASP . . . . . . . . . . . . . 9.6 t70 -72.45 117.15 13.76 Favored 'General case' 0 C--N 1.325 -0.497 0 CA-C-N 112.952 -1.931 . . . . 0.0 110.289 175.971 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 14' ' ' ARG . . . . . . . . . . . . . 14.8 ttm180 -109.63 61.13 0.6 Allowed 'General case' 0 N--CA 1.475 0.825 0 CA-C-N 111.204 -2.726 . . . . 0.0 108.89 171.813 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 15' ' ' GLN . . . . . . . . . . . . . 7.1 pt20 -69.27 157.46 36.92 Favored 'General case' 0 N--CA 1.47 0.559 1 O-C-N 115.079 -4.763 . . . . 0.0 111.635 172.363 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 16' ' ' HIS . . . . . . . . . . . . . 17.0 m-70 -90.53 70.15 6.85 Favored 'General case' 0 N--CA 1.473 0.681 0 N-CA-C 107.788 -1.19 . . . . 0.0 107.788 -172.691 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 17' ' ' ARG . . . . . . . . . . . . . 10.7 mmt180 -50.27 108.4 0.22 Allowed 'General case' 0 N--CA 1.473 0.681 0 CA-C-N 111.896 -2.411 . . . . 0.0 116.804 178.114 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 18' ' ' LYS . . . . . . . . . . . . . 50.4 mtpt 62.82 66.72 0.74 Allowed 'General case' 0 N--CA 1.471 0.604 0 CA-C-O 127.873 3.701 . . . . 0.0 112.022 169.988 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 19' ' ' LYS . . . . . . . . . . . . . 38.0 mttt 39.32 91.62 0.01 OUTLIER 'General case' 0 CA--C 1.536 0.406 0 O-C-N 117.152 -3.468 . . . . 0.0 116.191 -168.589 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 20' ' ' GLN . . . . . . . . . . . . 0.286 36.6 tt0 . . . . . 0 C--O 1.254 1.299 0 C-N-CA 129.861 3.264 . . . . 0.0 102.864 168.74 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' MET . . . . . . . . . . . . . 39.6 tpp . . . . . 0 N--CA 1.47 0.569 0 CA-C-O 115.477 -2.201 . . . . 0.0 111.793 . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ALA . . . . . . . . . . . . . . . -139.84 61.34 1.54 Allowed 'General case' 0 N--CA 1.477 0.905 1 O-C-N 129.939 4.524 . . . . 0.0 109.655 177.096 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ALA . . . . . . . . . . . . . . . -88.47 74.69 8.51 Favored 'General case' 0 N--CA 1.479 0.998 1 CA-C-O 130.023 4.725 . . . . 0.0 109.099 173.801 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 4' ' ' VAL . . . . . . . . . . . . . 22.6 m -108.59 77.8 0.46 Allowed 'Isoleucine or valine' 0 C--N 1.322 -0.615 0 O-C-N 117.049 -3.532 . . . . 0.0 109.338 -176.322 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ALA . . . . . . . . . . . . . . . -114.31 41.2 2.34 Favored 'General case' 0 N--CA 1.469 0.475 0 CA-C-N 109.28 -3.6 . . . . 0.0 106.51 -173.52 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' GLY . . . . . . . . . . . . . . . 59.8 -72.97 0.01 OUTLIER Glycine 0 N--CA 1.477 1.395 1 C-N-CA 130.819 4.057 . . . . 0.0 118.521 176.592 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 7' ' ' LEU . . . . . . . . . . . . . 43.5 mt -73.66 -25.35 60.23 Favored 'General case' 0 C--N 1.327 -0.411 0 C-N-CA 117.292 -1.763 . . . . 0.0 112.217 178.309 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' TYR . . . . . . . . . . . . . 47.0 t80 -120.87 94.43 4.35 Favored 'General case' 0 N--CA 1.476 0.837 0 N-CA-C 107.021 -1.474 . . . . 0.0 107.021 164.302 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 9' ' ' GLY . . . . . . . . . . . . . . . -98.92 73.32 0.54 Allowed Glycine 0 N--CA 1.472 1.069 0 C-N-CA 128.717 3.056 . . . . 0.0 119.041 174.464 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 10' ' ' LEU . . . . . . . . . . . . . 0.8 OUTLIER -114.58 97.14 6.11 Favored 'General case' 0 CA--C 1.539 0.556 0 CA-C-O 124.876 2.274 . . . . 0.0 116.404 -176.984 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 11' ' ' GLY . . . . . . . . . . . . . . . -119.47 129.87 8.24 Favored Glycine 0 N--CA 1.472 1.09 0 CA-C-N 112.44 -2.163 . . . . 0.0 111.618 -177.58 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 12' ' ' GLU . . . . . . . . . . . . . 30.0 tt0 -166.28 119.93 1.1 Allowed 'General case' 0 N--CA 1.469 0.507 0 N-CA-C 119.315 3.08 . . . . 0.0 119.315 -179.853 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 13' ' ' ASP . . . . . . . . . . . . . 9.6 t70 -72.45 117.15 13.76 Favored 'General case' 0 C--N 1.325 -0.497 0 CA-C-N 112.952 -1.931 . . . . 0.0 110.289 175.971 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 14' ' ' ARG . . . . . . . . . . . . . 14.8 ttm180 -109.63 61.13 0.6 Allowed 'General case' 0 N--CA 1.475 0.825 0 CA-C-N 111.204 -2.726 . . . . 0.0 108.89 171.813 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 15' ' ' GLN . . . . . . . . . . . . . 7.1 pt20 -69.27 157.46 36.92 Favored 'General case' 0 N--CA 1.47 0.559 1 O-C-N 115.079 -4.763 . . . . 0.0 111.635 172.363 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 16' ' ' HIS . . . . . . . . . . . . . 17.0 m-70 -90.53 70.15 6.85 Favored 'General case' 0 N--CA 1.473 0.681 0 N-CA-C 107.788 -1.19 . . . . 0.0 107.788 -172.691 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 17' ' ' ARG . . . . . . . . . . . . . 10.7 mmt180 -50.27 108.4 0.22 Allowed 'General case' 0 N--CA 1.473 0.681 0 CA-C-N 111.896 -2.411 . . . . 0.0 116.804 178.114 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 18' ' ' LYS . . . . . . . . . . . . . 50.4 mtpt 62.82 66.72 0.74 Allowed 'General case' 0 N--CA 1.471 0.604 0 CA-C-O 127.873 3.701 . . . . 0.0 112.022 169.988 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 19' ' ' LYS . . . . . . . . . . . . . 38.0 mttt 39.32 91.62 0.01 OUTLIER 'General case' 0 CA--C 1.536 0.406 0 O-C-N 117.152 -3.468 . . . . 0.0 116.191 -168.589 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 20' ' ' GLN . . . . . . . . . . . . 0.286 36.6 tt0 . . . . . 0 C--O 1.254 1.299 0 C-N-CA 129.861 3.264 . . . . 0.0 102.864 168.74 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' MET . . . . . . . . . . . . . 39.6 tpp . . . . . 0 N--CA 1.47 0.569 0 CA-C-O 115.477 -2.201 . . . . 0.0 111.793 . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ALA . . . . . . . . . . . . . . . -139.84 61.34 1.54 Allowed 'General case' 0 N--CA 1.477 0.905 1 O-C-N 129.939 4.524 . . . . 0.0 109.655 177.096 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ALA . . . . . . . . . . . . . . . -88.47 74.69 8.51 Favored 'General case' 0 N--CA 1.479 0.998 1 CA-C-O 130.023 4.725 . . . . 0.0 109.099 173.801 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' VAL . . . . . . . . . . . . . 22.6 m -108.59 77.8 0.46 Allowed 'Isoleucine or valine' 0 C--N 1.322 -0.615 0 O-C-N 117.049 -3.532 . . . . 0.0 109.338 -176.322 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ALA . . . . . . . . . . . . . . . -114.31 41.2 2.34 Favored 'General case' 0 N--CA 1.469 0.475 0 CA-C-N 109.28 -3.6 . . . . 0.0 106.51 -173.52 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' GLY . . . . . . . . . . . . . . . 59.8 -72.97 0.01 OUTLIER Glycine 0 N--CA 1.477 1.395 1 C-N-CA 130.819 4.057 . . . . 0.0 118.521 176.592 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' LEU . . . . . . . . . . . . . 43.5 mt -73.66 -25.35 60.23 Favored 'General case' 0 C--N 1.327 -0.411 0 C-N-CA 117.292 -1.763 . . . . 0.0 112.217 178.309 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' TYR . . . . . . . . . . . . . 47.0 t80 -120.87 94.43 4.35 Favored 'General case' 0 N--CA 1.476 0.837 0 N-CA-C 107.021 -1.474 . . . . 0.0 107.021 164.302 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' GLY . . . . . . . . . . . . . . . -98.92 73.32 0.54 Allowed Glycine 0 N--CA 1.472 1.069 0 C-N-CA 128.717 3.056 . . . . 0.0 119.041 174.464 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' LEU . . . . . . . . . . . . . 0.8 OUTLIER -114.58 97.14 6.11 Favored 'General case' 0 CA--C 1.539 0.556 0 CA-C-O 124.876 2.274 . . . . 0.0 116.404 -176.984 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' GLY . . . . . . . . . . . . . . . -119.47 129.87 8.24 Favored Glycine 0 N--CA 1.472 1.09 0 CA-C-N 112.44 -2.163 . . . . 0.0 111.618 -177.58 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 12' ' ' GLU . . . . . . . . . . . . . 30.0 tt0 -166.28 119.93 1.1 Allowed 'General case' 0 N--CA 1.469 0.507 0 N-CA-C 119.315 3.08 . . . . 0.0 119.315 -179.853 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 13' ' ' ASP . . . . . . . . . . . . . 9.6 t70 -72.45 117.15 13.76 Favored 'General case' 0 C--N 1.325 -0.497 0 CA-C-N 112.952 -1.931 . . . . 0.0 110.289 175.971 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 14' ' ' ARG . . . . . . . . . . . . . 14.8 ttm180 -109.63 61.13 0.6 Allowed 'General case' 0 N--CA 1.475 0.825 0 CA-C-N 111.204 -2.726 . . . . 0.0 108.89 171.813 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 15' ' ' GLN . . . . . . . . . . . . . 7.1 pt20 -69.27 157.46 36.92 Favored 'General case' 0 N--CA 1.47 0.559 1 O-C-N 115.079 -4.763 . . . . 0.0 111.635 172.363 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 16' ' ' HIS . . . . . . . . . . . . . 17.0 m-70 -90.53 70.15 6.85 Favored 'General case' 0 N--CA 1.473 0.681 0 N-CA-C 107.788 -1.19 . . . . 0.0 107.788 -172.691 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 17' ' ' ARG . . . . . . . . . . . . . 10.7 mmt180 -50.27 108.4 0.22 Allowed 'General case' 0 N--CA 1.473 0.681 0 CA-C-N 111.896 -2.411 . . . . 0.0 116.804 178.114 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 18' ' ' LYS . . . . . . . . . . . . . 50.4 mtpt 62.82 66.72 0.74 Allowed 'General case' 0 N--CA 1.471 0.604 0 CA-C-O 127.873 3.701 . . . . 0.0 112.022 169.988 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 19' ' ' LYS . . . . . . . . . . . . . 38.0 mttt 39.32 91.62 0.01 OUTLIER 'General case' 0 CA--C 1.536 0.406 0 O-C-N 117.152 -3.468 . . . . 0.0 116.191 -168.589 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 20' ' ' GLN . . . . . . . . . . . . 0.286 36.6 tt0 . . . . . 0 C--O 1.254 1.299 0 C-N-CA 129.861 3.264 . . . . 0.0 102.864 168.74 . . . . . . . . 1 1 . 1 stop_ save_