data_2lb4_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 2lb4 _Structure_validation_residue.Date_analyzed 2016-10-07 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.569 2 O4'-C1'-N19 112.041 5.301 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.939 0 O4'-C4'-C3' 109.09 3.49 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.547 4.548 1 N19-C1'-C2' 105.933 -5.167 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.544 4.157 1 O5'-C5'-C4' 117.163 4.974 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.932 3 C4'-C3'-C2' 97.446 -5.754 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' BGR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.543 4.009 4 C3'-C2'-C1' 110.007 5.219 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.542 3.91 0 O4'-C1'-N19 110.464 3.33 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.579 0 O4'-C1'-N19 110.36 3.2 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' B' B ' 10' ' ' ' G' . . . . . 0.402 " H2'" ' C8 ' ' B' ' 11' ' ' ' A' . . . . . . . . 0 C2'--C1' 1.504 -2.419 1 C3'-C2'-C1' 106.346 5.385 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 11' ' ' ' A' . . . . . 0.402 ' C8 ' " H2'" ' B' ' 10' ' ' ' G' . . . . . . . . 0 C5'--C4' 1.543 2.529 1 C4'-C3'-C2' 98.131 -4.569 . 0.366 1a . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.422 -2.589 1 O4'-C1'-N19 112.346 4.146 . 0.505 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 13' ' ' ' C' . . . . . 0.405 HO2' " H5'" ' B' ' 14' ' ' ' A' . . . . . . . . 0 C5'--C4' 1.536 2.004 0 O4'-C1'-N19 112.137 3.937 . 0.595 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 14' ' ' ' A' . . . . . 0.405 " H5'" HO2' ' B' ' 13' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.418 -2.951 1 C4'-C3'-C2' 98.678 -4.022 . 0.778 1a . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 15' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.424 -2.43 2 C5'-C4'-O4' 116.293 5.066 . 0.391 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 16' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.423 -2.528 0 O4'-C1'-N19 112.104 3.904 . 0.769 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' B' B ' 17' ' ' ' A' . . . . . 0.508 HO2' " C5'" ' B' ' 18' ' ' ' U' . . . . . . . . 0 P--O3' 1.576 -2.557 0 C3'-C2'-C1' 104.734 3.594 . 0.864 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 18' ' ' ' U' . . . . . 0.508 " C5'" HO2' ' B' ' 17' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.419 -2.84 1 O4'-C1'-N19 114.092 5.892 . 0.493 1a . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.569 2 O4'-C1'-N19 112.041 5.301 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.939 0 O4'-C4'-C3' 109.09 3.49 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.547 4.548 1 N19-C1'-C2' 105.933 -5.167 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.544 4.157 1 O5'-C5'-C4' 117.163 4.974 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.932 3 C4'-C3'-C2' 97.446 -5.754 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' BGR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.543 4.009 4 C3'-C2'-C1' 110.007 5.219 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.542 3.91 0 O4'-C1'-N19 110.464 3.33 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.579 0 O4'-C1'-N19 110.36 3.2 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' B' B ' 10' ' ' ' G' . . . . . 0.487 " H2'" ' C8 ' ' B' ' 11' ' ' ' A' . . . . . . . . 0 C2'--C1' 1.504 -2.419 1 C3'-C2'-C1' 106.346 5.385 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 11' ' ' ' A' . . . . . 0.487 ' C8 ' " H2'" ' B' ' 10' ' ' ' G' . . . . . . . . 0 C5'--C4' 1.543 2.529 1 C4'-C3'-C2' 98.131 -4.569 . 0.366 1a . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.422 -2.589 1 O4'-C1'-N19 112.346 4.146 . 0.505 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 13' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 2.004 0 O4'-C1'-N19 112.137 3.937 . 0.595 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' B' B ' 14' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.418 -2.951 1 C4'-C3'-C2' 98.678 -4.022 . 0.778 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 15' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.424 -2.43 2 C5'-C4'-O4' 116.293 5.066 . 0.391 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 16' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.423 -2.528 0 O4'-C1'-N19 112.104 3.904 . 0.769 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' B' B ' 17' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.576 -2.557 0 C3'-C2'-C1' 104.734 3.594 . 0.864 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' B' B ' 18' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.419 -2.84 1 O4'-C1'-N19 114.092 5.892 . 0.493 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.569 2 O4'-C1'-N19 112.041 5.301 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.939 0 O4'-C4'-C3' 109.09 3.49 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.547 4.548 1 N19-C1'-C2' 105.933 -5.167 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.544 4.157 1 O5'-C5'-C4' 117.163 4.974 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.932 3 C4'-C3'-C2' 97.446 -5.754 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' BGR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.543 4.009 4 C3'-C2'-C1' 110.007 5.219 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.542 3.91 0 O4'-C1'-N19 110.464 3.33 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.579 0 O4'-C1'-N19 110.36 3.2 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' B' B ' 10' ' ' ' G' . . . . . 0.487 " H2'" ' C8 ' ' B' ' 11' ' ' ' A' . . . . . . . . 0 C2'--C1' 1.504 -2.419 1 C3'-C2'-C1' 106.346 5.385 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 11' ' ' ' A' . . . . . 0.487 ' C8 ' " H2'" ' B' ' 10' ' ' ' G' . . . . . . . . 0 C5'--C4' 1.543 2.529 1 C4'-C3'-C2' 98.131 -4.569 . 0.366 1a . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.422 -2.589 1 O4'-C1'-N19 112.346 4.146 . 0.505 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 13' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 2.004 0 O4'-C1'-N19 112.137 3.937 . 0.595 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' B' B ' 14' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.418 -2.951 1 C4'-C3'-C2' 98.678 -4.022 . 0.778 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 15' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.424 -2.43 2 C5'-C4'-O4' 116.293 5.066 . 0.391 1a . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 16' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.423 -2.528 0 O4'-C1'-N19 112.104 3.904 . 0.769 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' B' B ' 17' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 P--O3' 1.576 -2.557 0 C3'-C2'-C1' 104.734 3.594 . 0.864 1a . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' B' B ' 18' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.419 -2.84 1 O4'-C1'-N19 114.092 5.892 . 0.493 1a . 0.0 . . . . . . . . . . 1 1 . 1 stop_ save_