data_5zgl_residue ############################ # Computer software used # ############################ save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 5zgl _Structure_validation_residue.Date_analyzed 2019-03-29 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 234' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 N--CA 1.438 -1.233 0 N-CA-C 110.293 -1.123 . . . . 13.61 110.293 . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 235' ' ' GLY . . . . . . . . . . . . . . . 171.16 173.04 37.91 Favored Glycine 0 N--CA 1.444 -0.831 0 C-N-CA 119.426 -1.369 . . . . 5.84 110.568 -179.083 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 236' ' ' GLY . . . . . . . . . . . . . . . -175.22 -161.84 25.5 Favored Glycine 0 CA--C 1.5 -0.877 0 C-N-CA 119.906 -1.14 . . . . 4.96 110.961 177.391 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 237' ' ' TYR . . . . . . . . . . . . . 5.5 p90 -158.4 167.9 28.44 Favored 'General case' 0 CA--C 1.519 -0.245 0 N-CA-C 108.422 -0.955 . . . . 7.0 108.422 -178.352 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 238' ' ' GLY . . . . . . . . . . . . . . . -152.21 156.07 26.49 Favored Glycine 0 N--CA 1.445 -0.738 0 N-CA-C 109.923 -1.271 . . . . 5.12 109.923 158.422 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 239' ' ' GLY . . . . . . . . . . . . . . . 176.08 168.35 36.19 Favored Glycine 0 CA--C 1.487 -1.661 0 C-N-CA 118.737 -1.697 . . . . 10.22 110.612 175.849 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 240' ' ' SER . . . . . . . . . . . . . 59.9 p . . . . . 0 N--CA 1.423 -1.79 0 N-CA-C 107.723 -1.214 . . . . 24.19 107.723 169.046 . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 234' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 C--O 1.206 -1.6 0 CA-C-O 119.217 -0.769 . . . . 9.05 111.492 . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 235' ' ' GLY . . . . . . . . . . . . . . . 166.01 175.71 36.66 Favored Glycine 0 N--CA 1.444 -0.833 0 CA-C-N 118.288 1.044 . . . . 6.76 111.643 175.34 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 236' ' ' GLY . . . . . . . . . . . . . . . 172.14 -170.9 43.86 Favored Glycine 0 N--CA 1.45 -0.395 0 N-CA-C 110.038 -1.225 . . . . 4.54 110.038 -175.446 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 237' ' ' TYR . . . . . . . . . . . . . 54.4 t80 -158.23 137.09 11.34 Favored 'General case' 0 N--CA 1.452 -0.332 0 N-CA-C 108.001 -1.111 . . . . 9.15 108.001 -172.178 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 238' ' ' GLY . . . . . . . . . . . . . . . -139.16 164.79 25.82 Favored Glycine 0 C--N 1.348 1.239 0 N-CA-C 110.998 -0.841 . . . . 4.43 110.998 175.921 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 239' ' ' GLY . . . . . . . . . . . . . . . 162.92 -177.56 38.95 Favored Glycine 0 N--CA 1.449 -0.481 0 C-N-CA 120.082 -1.056 . . . . 4.81 112.316 -176.826 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 240' ' ' SER . . . . . . . . . . . . . 96.3 p . . . . . 0 CA--C 1.539 0.551 0 CA-C-N 114.201 -0.999 . . . . 8.86 111.782 178.298 . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 234' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 N--CA 1.438 -1.233 0 N-CA-C 110.293 -1.123 . . . . 13.61 110.293 . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 235' ' ' GLY . . . . . . . . . . . . . . . 171.16 173.04 37.91 Favored Glycine 0 N--CA 1.444 -0.831 0 C-N-CA 119.426 -1.369 . . . . 4.86 110.568 -179.083 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 236' ' ' GLY . . . . . . . . . . . . . . . -175.22 -161.84 25.5 Favored Glycine 0 CA--C 1.5 -0.877 0 C-N-CA 119.906 -1.14 . . . . 4.14 110.961 177.391 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 237' ' ' TYR . . . . . . . . . . . . . 5.5 p90 -158.4 167.9 28.44 Favored 'General case' 0 CA--C 1.519 -0.245 0 N-CA-C 108.422 -0.955 . . . . 5.83 108.422 -178.352 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 238' ' ' GLY . . . . . . . . . . . . . . . -152.21 156.07 26.49 Favored Glycine 0 N--CA 1.445 -0.738 0 N-CA-C 109.923 -1.271 . . . . 4.79 109.923 158.422 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 239' ' ' GLY . . . . . . . . . . . . . . . 176.08 168.35 36.19 Favored Glycine 0 CA--C 1.487 -1.661 0 C-N-CA 118.737 -1.697 . . . . 10.22 110.612 175.849 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 240' ' ' SER . . . . . . . . . . . . . 59.9 p . . . . . 0 N--CA 1.423 -1.79 0 N-CA-C 107.723 -1.214 . . . . 23.39 107.723 169.046 . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 234' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 C--O 1.206 -1.6 0 CA-C-O 119.217 -0.769 . . . . 7.78 111.492 . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 235' ' ' GLY . . . . . . . . . . . . . . . 166.01 175.71 36.66 Favored Glycine 0 N--CA 1.444 -0.833 0 CA-C-N 118.288 1.044 . . . . 5.63 111.643 175.34 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 236' ' ' GLY . . . . . . . . . . . . . . . 172.14 -170.9 43.86 Favored Glycine 0 N--CA 1.45 -0.395 0 N-CA-C 110.038 -1.225 . . . . 4.08 110.038 -175.446 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 237' ' ' TYR . . . . . . . . . . . . . 54.4 t80 -158.23 137.09 11.34 Favored 'General case' 0 N--CA 1.452 -0.332 0 N-CA-C 108.001 -1.111 . . . . 7.63 108.001 -172.178 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 238' ' ' GLY . . . . . . . . . . . . . . . -139.16 164.79 25.82 Favored Glycine 0 C--N 1.348 1.239 0 N-CA-C 110.998 -0.841 . . . . 4.29 110.998 175.921 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 239' ' ' GLY . . . . . . . . . . . . . . . 162.92 -177.56 38.95 Favored Glycine 0 N--CA 1.449 -0.481 0 C-N-CA 120.082 -1.056 . . . . 4.48 112.316 -176.826 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 240' ' ' SER . . . . . . . . . . . . . 96.3 p . . . . . 0 CA--C 1.539 0.551 0 CA-C-N 114.201 -0.999 . . . . 8.47 111.782 178.298 . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 234' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 N--CA 1.438 -1.233 0 N-CA-C 110.293 -1.123 . . . . 13.61 110.293 . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 235' ' ' GLY . . . . . . . . . . . . . . . 171.16 173.04 37.91 Favored Glycine 0 N--CA 1.444 -0.831 0 C-N-CA 119.426 -1.369 . . . . 4.86 110.568 -179.083 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 236' ' ' GLY . . . . . . . . . . . . . . . -175.22 -161.84 25.5 Favored Glycine 0 CA--C 1.5 -0.877 0 C-N-CA 119.906 -1.14 . . . . 4.14 110.961 177.391 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 237' ' ' TYR . . . . . . . . . . . . . 5.5 p90 -158.4 167.9 28.44 Favored 'General case' 0 CA--C 1.519 -0.245 0 N-CA-C 108.422 -0.955 . . . . 5.83 108.422 -178.352 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 238' ' ' GLY . . . . . . . . . . . . . . . -152.21 156.07 26.49 Favored Glycine 0 N--CA 1.445 -0.738 0 N-CA-C 109.923 -1.271 . . . . 4.79 109.923 158.422 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 239' ' ' GLY . . . . . . . . . . . . . . . 176.08 168.35 36.19 Favored Glycine 0 CA--C 1.487 -1.661 0 C-N-CA 118.737 -1.697 . . . . 10.22 110.612 175.849 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 240' ' ' SER . . . . . . . . . . . . . 59.9 p . . . . . 0 N--CA 1.423 -1.79 0 N-CA-C 107.723 -1.214 . . . . 23.39 107.723 169.046 . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 234' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 C--O 1.206 -1.6 0 CA-C-O 119.217 -0.769 . . . . 7.78 111.492 . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 235' ' ' GLY . . . . . . . . . . . . . . . 166.01 175.71 36.66 Favored Glycine 0 N--CA 1.444 -0.833 0 CA-C-N 118.288 1.044 . . . . 5.63 111.643 175.34 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 236' ' ' GLY . . . . . . . . . . . . . . . 172.14 -170.9 43.86 Favored Glycine 0 N--CA 1.45 -0.395 0 N-CA-C 110.038 -1.225 . . . . 4.08 110.038 -175.446 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 237' ' ' TYR . . . . . . . . . . . . . 54.4 t80 -158.23 137.09 11.34 Favored 'General case' 0 N--CA 1.452 -0.332 0 N-CA-C 108.001 -1.111 . . . . 7.63 108.001 -172.178 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 238' ' ' GLY . . . . . . . . . . . . . . . -139.16 164.79 25.82 Favored Glycine 0 C--N 1.348 1.239 0 N-CA-C 110.998 -0.841 . . . . 4.29 110.998 175.921 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 239' ' ' GLY . . . . . . . . . . . . . . . 162.92 -177.56 38.95 Favored Glycine 0 N--CA 1.449 -0.481 0 C-N-CA 120.082 -1.056 . . . . 4.48 112.316 -176.826 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 240' ' ' SER . . . . . . . . . . . . . 96.3 p . . . . . 0 CA--C 1.539 0.551 0 CA-C-N 114.201 -0.999 . . . . 8.47 111.782 178.298 . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_