data_5zgd_residue ############################ # Computer software used # ############################ save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 5zgd _Structure_validation_residue.Date_analyzed 2019-03-29 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 209' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.505 -0.553 0 N-CA-C 111.825 -0.51 . . . . 4.31 111.825 . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 210' ' ' PHE . . . . . . . . . . . . . 22.0 t80 -54.76 131.67 44.28 Favored 'General case' 0 C--O 1.234 0.264 0 CA-C-O 121.36 0.6 . . . . 4.25 110.479 174.403 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 211' ' ' GLY . . . . . . . . . . . . . . . 79.55 3.78 88.98 Favored Glycine 0 N--CA 1.438 -1.219 0 C-N-CA 119.621 -1.276 . . . . 4.27 113.735 -176.947 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 212' ' ' GLY . . . . . . . . . . . . . . . -145.91 -147.46 4.6 Favored Glycine 0 N--CA 1.45 -0.378 0 N-CA-C 109.896 -1.282 . . . . 4.15 109.896 -176.948 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 213' ' ' ASN . . . . . . . . . . . . . 56.4 m-80 -121.05 150.13 41.65 Favored 'General case' 0 C--N 1.323 -0.555 0 CA-C-O 121.619 0.723 . . . . 4.36 111.349 -169.31 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 214' ' ' ASP . . . . . . . . . . . . . 3.5 m-20 -130.3 114.41 15.59 Favored 'General case' 0 C--O 1.239 0.549 0 N-CA-C 106.621 -1.622 . . . . 4.38 106.621 176.008 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 215' ' ' ASN . . . . . . . . . . . . . 71.6 m-80 -118.53 125.33 49.61 Favored 'General case' 0 CA--C 1.513 -0.46 0 CA-C-N 115.588 -0.733 . . . . 4.14 109.306 -171.16 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 216' ' ' PHE . . . . . . . . . . . . . 66.0 m-85 -120.99 116.78 25.73 Favored 'General case' 0 C--N 1.324 -0.53 0 N-CA-C 108.558 -0.904 . . . . 4.4 108.558 -178.944 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 217' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 C--O 1.245 0.813 0 C-N-CA 121.049 -0.596 . . . . 4.47 113.182 -178.519 . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 304' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 209' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.505 -0.553 0 N-CA-C 111.825 -0.51 . . . . 3.59 111.825 . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 210' ' ' PHE . . . . . . . . . . . . . 22.0 t80 -54.76 131.67 44.28 Favored 'General case' 0 C--O 1.234 0.264 0 CA-C-O 121.36 0.6 . . . . 3.54 110.479 174.403 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 211' ' ' GLY . . . . . . . . . . . . . . . 79.55 3.78 88.98 Favored Glycine 0 N--CA 1.438 -1.219 0 C-N-CA 119.621 -1.276 . . . . 4.27 113.735 -176.947 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 212' ' ' GLY . . . . . . . . . . . . . . . -145.91 -147.46 4.6 Favored Glycine 0 N--CA 1.45 -0.378 0 N-CA-C 109.896 -1.282 . . . . 3.52 109.896 -176.948 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 213' ' ' ASN . . . . . . . . . . . . . 56.4 m-80 -121.05 150.13 41.65 Favored 'General case' 0 C--N 1.323 -0.555 0 CA-C-O 121.619 0.723 . . . . 3.64 111.349 -169.31 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 214' ' ' ASP . . . . . . . . . . . . . 3.5 m-20 -130.3 114.41 15.59 Favored 'General case' 0 C--O 1.239 0.549 0 N-CA-C 106.621 -1.622 . . . . 4.3 106.621 176.008 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 215' ' ' ASN . . . . . . . . . . . . . 71.6 m-80 -118.53 125.33 49.61 Favored 'General case' 0 CA--C 1.513 -0.46 0 CA-C-N 115.588 -0.733 . . . . 3.68 109.306 -171.16 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 216' ' ' PHE . . . . . . . . . . . . . 66.0 m-85 -120.99 116.78 25.73 Favored 'General case' 0 C--N 1.324 -0.53 0 N-CA-C 108.558 -0.904 . . . . 4.0 108.558 -178.944 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 217' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 C--O 1.245 0.813 0 C-N-CA 121.049 -0.596 . . . . 3.86 113.182 -178.519 . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 304' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 209' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.505 -0.553 0 N-CA-C 111.825 -0.51 . . . . 3.59 111.825 . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 210' ' ' PHE . . . . . . . . . . . . . 22.0 t80 -54.76 131.67 44.28 Favored 'General case' 0 C--O 1.234 0.264 0 CA-C-O 121.36 0.6 . . . . 3.54 110.479 174.403 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 211' ' ' GLY . . . . . . . . . . . . . . . 79.55 3.78 88.98 Favored Glycine 0 N--CA 1.438 -1.219 0 C-N-CA 119.621 -1.276 . . . . 4.27 113.735 -176.947 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 212' ' ' GLY . . . . . . . . . . . . . . . -145.91 -147.46 4.6 Favored Glycine 0 N--CA 1.45 -0.378 0 N-CA-C 109.896 -1.282 . . . . 3.52 109.896 -176.948 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 213' ' ' ASN . . . . . . . . . . . . . 56.4 m-80 -121.05 150.13 41.65 Favored 'General case' 0 C--N 1.323 -0.555 0 CA-C-O 121.619 0.723 . . . . 3.64 111.349 -169.31 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 214' ' ' ASP . . . . . . . . . . . . . 3.5 m-20 -130.3 114.41 15.59 Favored 'General case' 0 C--O 1.239 0.549 0 N-CA-C 106.621 -1.622 . . . . 4.3 106.621 176.008 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 215' ' ' ASN . . . . . . . . . . . . . 71.6 m-80 -118.53 125.33 49.61 Favored 'General case' 0 CA--C 1.513 -0.46 0 CA-C-N 115.588 -0.733 . . . . 3.68 109.306 -171.16 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 216' ' ' PHE . . . . . . . . . . . . . 66.0 m-85 -120.99 116.78 25.73 Favored 'General case' 0 C--N 1.324 -0.53 0 N-CA-C 108.558 -0.904 . . . . 4.0 108.558 -178.944 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 217' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 C--O 1.245 0.813 0 C-N-CA 121.049 -0.596 . . . . 3.86 113.182 -178.519 . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 304' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_