data_1uqd_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1uqd _Structure_validation_residue.Date_analyzed 2016-10-07 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DC' . . . . . 0.437 H2'' ' C8 ' ' A' ' 2' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.405 -3.76 1 O4'-C4'-C3' 110.269 4.669 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DG' . . . . . 0.437 ' C8 ' H2'' ' A' ' 1' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.415 -2.78 2 OP1-P-OP2 112.154 -4.964 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.486 -3.152 1 OP1-P-OP2 113.077 -4.349 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.481 -3.722 5 O4'-C4'-C3' 114.92 9.32 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.408 -3.491 4 O4'-C4'-C3' 113.578 7.978 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.408 -3.477 3 C5'-C4'-O4' 120.941 7.213 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 7' ' ' ' DC' . . . . . 0.436 H2'' ' C8 ' ' B' ' 8' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.404 -3.801 1 O4'-C4'-C3' 109.986 4.386 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 8' ' ' ' DG' . . . . . 0.436 ' C8 ' H2'' ' B' ' 7' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.415 -2.801 2 OP1-P-OP2 112.179 -4.947 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 9' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.486 -3.187 1 OP1-P-OP2 113.061 -4.36 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 10' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.481 -3.717 5 O4'-C4'-C3' 114.917 9.317 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.408 -3.475 4 O4'-C4'-C3' 113.581 7.981 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.408 -3.487 3 C5'-C4'-O4' 120.986 7.241 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DC' . . . . . 0.495 H2'' ' C8 ' ' A' ' 2' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.405 -3.76 1 O4'-C4'-C3' 110.269 4.669 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DG' . . . . . 0.495 ' C8 ' H2'' ' A' ' 1' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.415 -2.78 2 OP1-P-OP2 112.154 -4.964 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.486 -3.152 1 OP1-P-OP2 113.077 -4.349 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.481 -3.722 5 O4'-C4'-C3' 114.92 9.32 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DC' . . . . . 0.47 H2'' ' C8 ' ' A' ' 6' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.408 -3.491 4 O4'-C4'-C3' 113.578 7.978 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' DG' . . . . . 0.47 ' C8 ' H2'' ' A' ' 5' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.408 -3.477 3 C5'-C4'-O4' 120.941 7.213 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 7' ' ' ' DC' . . . . . 0.49 H2'' ' C8 ' ' B' ' 8' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.404 -3.801 1 O4'-C4'-C3' 109.986 4.386 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 8' ' ' ' DG' . . . . . 0.49 ' C8 ' H2'' ' B' ' 7' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.415 -2.801 2 OP1-P-OP2 112.179 -4.947 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 9' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.486 -3.187 1 OP1-P-OP2 113.061 -4.36 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 10' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.481 -3.717 5 O4'-C4'-C3' 114.917 9.317 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 11' ' ' ' DC' . . . . . 0.481 H2'' ' C8 ' ' B' ' 12' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.408 -3.475 4 O4'-C4'-C3' 113.581 7.981 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' DG' . . . . . 0.481 ' C8 ' H2'' ' B' ' 11' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.408 -3.487 3 C5'-C4'-O4' 120.986 7.241 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DC' . . . . . 0.495 H2'' ' C8 ' ' A' ' 2' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.405 -3.76 1 O4'-C4'-C3' 110.269 4.669 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DG' . . . . . 0.495 ' C8 ' H2'' ' A' ' 1' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.415 -2.78 2 OP1-P-OP2 112.154 -4.964 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.486 -3.152 1 OP1-P-OP2 113.077 -4.349 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.481 -3.722 5 O4'-C4'-C3' 114.92 9.32 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DC' . . . . . 0.47 H2'' ' C8 ' ' A' ' 6' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.408 -3.491 4 O4'-C4'-C3' 113.578 7.978 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' DG' . . . . . 0.47 ' C8 ' H2'' ' A' ' 5' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.408 -3.477 3 C5'-C4'-O4' 120.941 7.213 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 7' ' ' ' DC' . . . . . 0.49 H2'' ' C8 ' ' B' ' 8' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.404 -3.801 1 O4'-C4'-C3' 109.986 4.386 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 8' ' ' ' DG' . . . . . 0.49 ' C8 ' H2'' ' B' ' 7' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.415 -2.801 2 OP1-P-OP2 112.179 -4.947 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 9' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.486 -3.187 1 OP1-P-OP2 113.061 -4.36 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 10' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.481 -3.717 5 O4'-C4'-C3' 114.917 9.317 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 11' ' ' ' DC' . . . . . 0.481 H2'' ' C8 ' ' B' ' 12' ' ' ' DG' . . . . . . . . 0 O4'--C4' 1.408 -3.475 4 O4'-C4'-C3' 113.581 7.981 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' DG' . . . . . 0.481 ' C8 ' H2'' ' B' ' 11' ' ' ' DC' . . . . . . . . 0 O4'--C4' 1.408 -3.487 3 C5'-C4'-O4' 120.986 7.241 . . . . 0.0 . . . . . . . . . . 2 2 . 1 stop_ save_