data_2jmd_oneline save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_oneline _Structure_validation_oneline.Sf_category structure_validation _Structure_validation_oneline.Sf_framecode Structure_validation_oneline _Structure_validation_oneline.Entry_ID ? _Structure_validation_oneline.List_ID 1 _Structure_validation_oneline.PDB_accession_code 2jmd _Structure_validation_oneline.Date_analyzed 2016-10-09 loop_ _Oneline_analysis_software.Software_ID _Oneline_analysis_software.Software_label _Oneline_analysis_software.Method_ID _Oneline_analysis_software.Method_label _Oneline_analysis_software.Entry_ID _Oneline_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Oneline_analysis.ID _Oneline_analysis.PDB_model_num _Oneline_analysis.Hydrogen_positions _Oneline_analysis.MolProbity_flips _Oneline_analysis.Cyrange_core_flag _Oneline_analysis.Assembly_ID _Oneline_analysis.Macromolecule_types _Oneline_analysis.Clashscore _Oneline_analysis.Clashscore_B_under_40 _Oneline_analysis.Cbeta_outlier_count _Oneline_analysis.Cbeta_count _Oneline_analysis.Rotamer_outlier_count _Oneline_analysis.Rotamer_count _Oneline_analysis.Ramachandran_outlier_count _Oneline_analysis.Ramachandran_allowed_count _Oneline_analysis.Ramachandran_favored_count _Oneline_analysis.Ramachandran_count _Oneline_analysis.Bond_outlier_count _Oneline_analysis.Bond_count _Oneline_analysis.Percent_bond_outlier _Oneline_analysis.Percent_residues_with_bond_outlier _Oneline_analysis.Angle_outlier_count _Oneline_analysis.Angle_count _Oneline_analysis.Percent_angle_outlier _Oneline_analysis.Percent_residues_with_angle_outlier _Oneline_analysis.MolProbity_score _Oneline_analysis.RNA_phosphate_perpendicular_outlier_count _Oneline_analysis.RNA_phosphate_perpendicular_count _Oneline_analysis.RNA_suite_outlier_count _Oneline_analysis.RNA_suite_count _Oneline_analysis.Entry_ID _Oneline_analysis.Structure_validation_oneline_list_ID . 001 nuclear build core . protein 15.73 15.73 0 47 1 43 1 2 44 47 0 195 0.00 0.00 0 242 0.00 0.00 2.40 0 0 0 0 . 1 . 002 nuclear build core . protein 17.04 17.04 0 47 0 43 1 6 40 47 0 195 0.00 0.00 0 242 0.00 0.00 2.39 0 0 0 0 . 1 . 003 nuclear build core . protein 9.17 9.17 0 47 0 43 1 3 43 47 0 195 0.00 0.00 0 242 0.00 0.00 1.99 0 0 0 0 . 1 . 004 nuclear build core . protein 18.35 18.35 0 47 1 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.61 0 0 0 0 . 1 . 005 nuclear build core . protein 11.80 11.80 0 47 0 43 1 4 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.15 0 0 0 0 . 1 . 006 nuclear build core . protein 15.73 15.73 0 47 0 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.27 0 0 0 0 . 1 . 007 nuclear build core . protein 14.42 14.42 0 47 0 43 0 2 45 47 0 195 0.00 0.00 0 242 0.00 0.00 1.96 0 0 0 0 . 1 . 008 nuclear build core . protein 20.97 20.97 0 47 0 43 1 2 44 47 0 195 0.00 0.00 0 242 0.00 0.00 2.24 0 0 0 0 . 1 . 009 nuclear build core . protein 15.73 15.73 0 47 0 43 1 6 40 47 0 195 0.00 0.00 0 242 0.00 0.00 2.36 0 0 0 0 . 1 . 010 nuclear build core . protein 15.73 15.73 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.20 0 0 0 0 . 1 . 011 nuclear build core . protein 9.17 9.17 0 47 0 43 1 5 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.10 0 0 0 0 . 1 . 012 nuclear build core . protein 13.11 13.11 0 47 0 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.19 0 0 0 0 . 1 . 013 nuclear build core . protein 11.80 11.80 0 47 0 43 1 5 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.20 0 0 0 0 . 1 . 014 nuclear build core . protein 11.80 11.80 0 47 0 43 0 7 40 47 0 195 0.00 0.00 0 242 0.00 0.00 2.24 0 0 0 0 . 1 . 015 nuclear build core . protein 13.11 13.11 0 47 2 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.64 0 0 0 0 . 1 . 016 nuclear build core . protein 10.48 10.48 0 47 0 43 0 7 40 47 0 195 0.00 0.00 0 242 0.00 0.00 2.20 0 0 0 0 . 1 . 017 nuclear build core . protein 13.11 13.11 1 47 1 43 0 3 44 47 0 195 0.00 0.00 0 242 0.00 0.00 2.33 0 0 0 0 . 1 . 018 nuclear build core . protein 17.04 17.04 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.24 0 0 0 0 . 1 . 019 nuclear build core . protein 15.73 15.73 0 47 0 43 1 3 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.20 0 0 0 0 . 1 . 020 nuclear build core . protein 11.80 11.80 0 47 0 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.15 0 0 0 0 . 1 . 021 nuclear build core . protein 13.11 13.11 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.13 0 0 0 0 . 1 . 022 nuclear build core . protein 17.04 17.04 0 47 1 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.58 0 0 0 0 . 1 . 023 nuclear build core . protein 11.80 11.80 0 47 0 43 1 3 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.09 0 0 0 0 . 1 . 024 nuclear build core . protein 11.80 11.80 0 47 1 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.43 0 0 0 0 . 1 . 025 nuclear build core . protein 14.42 14.42 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.17 0 0 0 0 . 1 . 026 nuclear build core . protein 14.42 14.42 0 47 1 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.45 0 0 0 0 . 1 . 027 nuclear build core . protein 20.97 20.97 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.32 0 0 0 0 . 1 . 028 nuclear build core . protein 11.80 11.80 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.09 0 0 0 0 . 1 . 029 nuclear build core . protein 14.42 14.42 0 47 2 43 1 5 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.79 0 0 0 0 . 1 . 030 nuclear build core . protein 15.73 15.73 0 47 0 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.27 0 0 0 0 . 1 . 031 nuclear build core . protein 13.11 13.11 0 47 0 43 1 4 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.19 0 0 0 0 . 1 . 032 nuclear build core . protein 13.11 13.11 0 47 2 43 0 2 45 47 0 195 0.00 0.00 0 242 0.00 0.00 2.43 0 0 0 0 . 1 . 033 nuclear build core . protein 13.11 13.11 0 47 1 43 0 6 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.52 0 0 0 0 . 1 . 034 nuclear build core . protein 13.11 13.11 0 47 1 43 0 3 44 47 0 195 0.00 0.00 0 242 0.00 0.00 2.33 0 0 0 0 . 1 . 035 nuclear build core . protein 13.11 13.11 0 47 0 43 1 3 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.13 0 0 0 0 . 1 . 036 nuclear build core . protein 15.73 15.73 1 47 1 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.54 0 0 0 0 . 1 . 037 nuclear build core . protein 17.04 17.04 0 47 1 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.51 0 0 0 0 . 1 . 038 nuclear build core . protein 9.17 9.17 0 47 0 43 1 3 43 47 0 195 0.00 0.00 0 242 0.00 0.00 1.99 0 0 0 0 . 1 . 039 nuclear build core . protein 20.97 20.97 0 47 0 43 0 6 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.43 0 0 0 0 . 1 . 040 nuclear build core . protein 14.42 14.42 0 47 1 43 0 7 40 47 0 195 0.00 0.00 0 242 0.00 0.00 2.60 0 0 0 0 . 1 . 041 nuclear build core . protein 10.48 10.48 0 47 1 43 1 4 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.38 0 0 0 0 . 1 . 042 nuclear build core . protein 14.42 14.42 0 47 0 43 0 3 44 47 0 195 0.00 0.00 0 242 0.00 0.00 2.09 0 0 0 0 . 1 . 043 nuclear build core . protein 9.17 9.17 0 47 1 43 1 5 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.38 0 0 0 0 . 1 . 044 nuclear build core . protein 23.59 23.59 1 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.37 0 0 0 0 . 1 . 045 nuclear build core . protein 11.80 11.80 0 47 1 43 0 5 42 47 0 195 0.00 0.00 0 242 0.00 0.00 2.43 0 0 0 0 . 1 . 046 nuclear build core . protein 13.11 13.11 0 47 0 43 1 5 41 47 0 195 0.00 0.00 0 242 0.00 0.00 2.24 0 0 0 0 . 1 . 047 nuclear build core . protein 14.42 14.42 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.17 0 0 0 0 . 1 . 048 nuclear build core . protein 17.04 17.04 0 47 0 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.24 0 0 0 0 . 1 . 049 nuclear build core . protein 13.11 13.11 1 47 1 43 0 2 45 47 0 195 0.00 0.00 0 242 0.00 0.00 2.20 0 0 0 0 . 1 . 050 nuclear build core . protein 18.35 18.35 0 47 1 43 0 4 43 47 0 195 0.00 0.00 0 242 0.00 0.00 2.54 0 0 0 0 . 1 . 001 nuclear build full . protein 13.32 13.32 0 59 3 54 2 3 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.69 0 0 0 0 . 1 . 002 nuclear build full . protein 18.44 18.44 0 59 0 54 1 6 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.35 0 0 0 0 . 1 . 003 nuclear build full . protein 9.22 9.22 0 59 0 54 1 3 57 61 0 251 0.00 0.00 0 312 0.00 0.00 1.92 0 0 0 0 . 1 . 004 nuclear build full . protein 15.35 15.35 0 59 1 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.44 0 0 0 0 . 1 . 005 nuclear build full . protein 9.22 9.22 0 59 0 54 2 5 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.08 0 0 0 0 . 1 . 006 nuclear build full . protein 15.37 15.37 1 59 0 54 1 7 53 61 0 251 0.00 0.00 0 312 0.00 0.00 2.31 0 0 0 0 . 1 . 007 nuclear build full . protein 12.30 12.30 0 59 0 54 1 3 57 61 0 251 0.00 0.00 0 312 0.00 0.00 2.03 0 0 0 0 . 1 . 008 nuclear build full . protein 18.44 18.44 0 59 0 54 1 2 58 61 0 251 0.00 0.00 0 312 0.00 0.00 2.10 0 0 0 0 . 1 . 009 nuclear build full . protein 12.28 12.28 0 59 0 54 1 7 53 61 0 251 0.00 0.00 0 312 0.00 0.00 2.22 0 0 0 0 . 1 . 010 nuclear build full . protein 14.34 14.34 0 59 0 54 0 5 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.16 0 0 0 0 . 1 . 011 nuclear build full . protein 9.22 9.22 0 59 0 54 1 5 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.03 0 0 0 0 . 1 . 012 nuclear build full . protein 12.30 12.30 0 59 0 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.15 0 0 0 0 . 1 . 013 nuclear build full . protein 12.30 12.30 0 59 0 54 1 8 52 61 0 251 0.00 0.00 0 312 0.00 0.00 2.26 0 0 0 0 . 1 . 014 nuclear build full . protein 10.25 10.25 0 59 0 54 2 8 51 61 0 251 0.00 0.00 0 312 0.00 0.00 2.21 0 0 0 0 . 1 . 015 nuclear build full . protein 12.30 12.30 0 59 4 54 0 5 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.76 0 0 0 0 . 1 . 016 nuclear build full . protein 11.27 11.27 0 59 2 54 0 7 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.59 0 0 0 0 . 1 . 017 nuclear build full . protein 11.27 11.27 1 59 1 54 0 4 57 61 0 251 0.00 0.00 0 312 0.00 0.00 2.20 0 0 0 0 . 1 . 018 nuclear build full . protein 13.32 13.32 0 59 0 54 1 5 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.18 0 0 0 0 . 1 . 019 nuclear build full . protein 14.34 14.34 0 59 0 54 1 4 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.16 0 0 0 0 . 1 . 020 nuclear build full . protein 11.27 11.27 0 59 0 54 1 6 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.15 0 0 0 0 . 1 . 021 nuclear build full . protein 11.27 11.27 0 59 0 54 0 4 57 61 0 251 0.00 0.00 0 312 0.00 0.00 2.00 0 0 0 0 . 1 . 022 nuclear build full . protein 13.32 13.32 0 59 2 54 1 8 52 61 0 251 0.00 0.00 0 312 0.00 0.00 2.72 0 0 0 0 . 1 . 023 nuclear build full . protein 11.26 11.26 0 59 1 54 1 4 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.26 0 0 0 0 . 1 . 024 nuclear build full . protein 10.25 10.25 0 59 1 54 0 7 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.32 0 0 0 0 . 1 . 025 nuclear build full . protein 11.27 11.27 0 59 0 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.11 0 0 0 0 . 1 . 026 nuclear build full . protein 13.32 13.32 0 59 2 54 1 4 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.56 0 0 0 0 . 1 . 027 nuclear build full . protein 17.42 17.42 0 59 1 54 0 8 53 61 0 251 0.00 0.00 0 312 0.00 0.00 2.57 0 0 0 0 . 1 . 028 nuclear build full . protein 9.22 9.22 0 59 0 54 0 5 56 61 0 251 0.00 0.00 0 312 0.00 0.00 1.98 0 0 0 0 . 1 . 029 nuclear build full . protein 12.30 12.30 0 59 2 54 1 5 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.58 0 0 0 0 . 1 . 030 nuclear build full . protein 15.37 15.37 0 59 0 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.23 0 0 0 0 . 1 . 031 nuclear build full . protein 11.27 11.27 0 59 0 54 3 7 51 61 0 251 0.00 0.00 0 312 0.00 0.00 2.25 0 0 0 0 . 1 . 032 nuclear build full . protein 10.25 10.25 0 59 2 54 0 3 58 61 0 251 0.00 0.00 0 312 0.00 0.00 2.30 0 0 0 0 . 1 . 033 nuclear build full . protein 13.32 13.32 0 59 2 54 0 8 53 61 0 251 0.00 0.00 0 312 0.00 0.00 2.69 0 0 0 0 . 1 . 034 nuclear build full . protein 13.32 13.32 0 59 1 54 1 4 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.33 0 0 0 0 . 1 . 035 nuclear build full . protein 13.32 13.32 1 59 0 54 1 6 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.22 0 0 0 0 . 1 . 036 nuclear build full . protein 14.34 14.34 1 59 2 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.64 0 0 0 0 . 1 . 037 nuclear build full . protein 14.34 14.34 0 59 2 54 0 5 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.59 0 0 0 0 . 1 . 038 nuclear build full . protein 8.20 8.20 0 59 1 54 2 6 53 61 0 251 0.00 0.00 0 312 0.00 0.00 2.27 0 0 0 0 . 1 . 039 nuclear build full . protein 17.42 17.42 0 59 0 54 1 9 51 61 0 251 0.00 0.00 0 312 0.00 0.00 2.42 0 0 0 0 . 1 . 040 nuclear build full . protein 12.30 12.30 0 59 1 54 2 9 50 61 0 251 0.00 0.00 0 312 0.00 0.00 2.51 0 0 0 0 . 1 . 041 nuclear build full . protein 11.27 11.27 0 59 2 54 1 5 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.54 0 0 0 0 . 1 . 042 nuclear build full . protein 13.32 13.32 0 59 0 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.18 0 0 0 0 . 1 . 043 nuclear build full . protein 8.20 8.20 0 59 1 54 1 5 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.19 0 0 0 0 . 1 . 044 nuclear build full . protein 17.42 17.42 1 59 0 54 0 7 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.33 0 0 0 0 . 1 . 045 nuclear build full . protein 11.27 11.27 0 59 1 54 0 6 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.31 0 0 0 0 . 1 . 046 nuclear build full . protein 10.25 10.25 0 59 1 54 1 5 55 61 0 251 0.00 0.00 0 312 0.00 0.00 2.28 0 0 0 0 . 1 . 047 nuclear build full . protein 15.37 15.37 0 59 0 54 0 8 53 61 0 251 0.00 0.00 0 312 0.00 0.00 2.31 0 0 0 0 . 1 . 048 nuclear build full . protein 15.37 15.37 0 59 2 54 0 7 54 61 0 251 0.00 0.00 0 312 0.00 0.00 2.71 0 0 0 0 . 1 . 049 nuclear build full . protein 11.27 11.27 1 59 1 54 0 5 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.26 0 0 0 0 . 1 . 050 nuclear build full . protein 16.39 16.39 0 59 1 54 1 4 56 61 0 251 0.00 0.00 0 312 0.00 0.00 2.41 0 0 0 0 . 1 stop_ save_