data_3hyd_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 3hyd _Structure_validation_residue.Date_analyzed 2016-10-12 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 1' ' ' LEU . . . . . . . . . . . . . 7.3 tt . . . . . 0 CA--C 1.504 -0.813 0 N-CA-C 110.106 -0.331 . . . . 18.81 110.106 . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 2' ' ' VAL . . . . . . . . . . . . . 94.6 t -133.02 130.21 58.17 Favored 'Isoleucine or valine' 0 C--O 1.25 1.126 0 N-CA-C 109.587 -0.523 . . . . 5.05 109.587 174.993 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 3' ' ' GLU . . . . . . . . . . . . . 47.8 tt0 -117.15 118.92 33.65 Favored 'General case' 0 C--O 1.239 0.502 0 N-CA-C 105.275 -2.121 . . . . 5.24 105.275 168.188 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 4' ' ' ALA . . . . . . . . . . . . . . . -133.82 139.62 46.38 Favored 'General case' 0 C--O 1.242 0.699 0 C-N-CA 123.109 0.563 . . . . 4.15 111.348 -173.387 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 5' ' ' LEU . . . . . . . . . . . . . 10.6 tp -135.19 124.83 25.17 Favored 'General case' 0 C--N 1.317 -0.841 0 N-CA-C 108.079 -1.082 . . . . 11.72 108.079 -179.45 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 6' ' ' TYR . . . . . . . . . . . . . 13.1 m-85 -126.12 122.71 36.51 Favored 'General case' 0 CA--C 1.511 -0.525 0 C-N-CA 124.071 0.949 . . . . 4.6 108.92 -177.796 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 7' ' ' LEU . . . . . . . . . . . . . 2.2 pt? . . . . . 0 CA--C 1.479 -1.774 0 N-CA-C 114.071 1.137 . . . . 18.81 114.071 173.976 . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 8' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 9' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 10' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 1' ' ' LEU . . . . . . . . . . . . . 7.3 tt . . . . . 0 CA--C 1.504 -0.813 0 N-CA-C 110.106 -0.331 . . . . 18.809999999999999 110.106 . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 2' ' ' VAL . . . . . . . . . . . . . 94.6 t -133.02 130.21 58.17 Favored 'Isoleucine or valine' 0 C--O 1.25 1.126 0 N-CA-C 109.587 -0.523 . . . . 5.0499999999999998 109.587 174.993 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 3' ' ' GLU . . . . . . . . . . . . . 47.8 tt0 -117.15 118.92 33.65 Favored 'General case' 0 C--O 1.239 0.502 0 N-CA-C 105.275 -2.121 . . . . 5.2400000000000002 105.275 168.188 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 4' ' ' ALA . . . . . . . . . . . . . . . -133.82 139.62 46.38 Favored 'General case' 0 C--O 1.242 0.699 0 C-N-CA 123.109 0.563 . . . . 4.1500000000000004 111.348 -173.387 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 5' ' ' LEU . . . . . . . . . . . . . 10.6 tp -135.19 124.83 25.17 Favored 'General case' 0 C--N 1.317 -0.841 0 N-CA-C 108.079 -1.082 . . . . 11.720000000000001 108.079 -179.45 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 6' ' ' TYR . . . . . . . . . . . . . 13.1 m-85 -126.12 122.71 36.51 Favored 'General case' 0 CA--C 1.511 -0.525 0 C-N-CA 124.071 0.949 . . . . 4.5999999999999996 108.92 -177.796 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 7' ' ' LEU . . . . . . . . . . . . . 2.2 pt? . . . . . 0 CA--C 1.479 -1.774 0 N-CA-C 114.071 1.137 . . . . 18.809999999999999 114.071 173.976 . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 8' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 9' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 10' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 1' ' ' LEU . . . . . . . . . . . . . 7.3 tt . . . . . 0 CA--C 1.504 -0.813 0 N-CA-C 110.106 -0.331 . . . . 18.809999999999999 110.106 . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 2' ' ' VAL . . . . . . . . . . . . . 94.6 t -133.02 130.21 58.17 Favored 'Isoleucine or valine' 0 C--O 1.25 1.126 0 N-CA-C 109.587 -0.523 . . . . 5.0499999999999998 109.587 174.993 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 3' ' ' GLU . . . . . . . . . . . . . 47.8 tt0 -117.15 118.92 33.65 Favored 'General case' 0 C--O 1.239 0.502 0 N-CA-C 105.275 -2.121 . . . . 5.2400000000000002 105.275 168.188 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 4' ' ' ALA . . . . . . . . . . . . . . . -133.82 139.62 46.38 Favored 'General case' 0 C--O 1.242 0.699 0 C-N-CA 123.109 0.563 . . . . 4.1500000000000004 111.348 -173.387 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 5' ' ' LEU . . . . . . . . . . . . . 10.6 tp -135.19 124.83 25.17 Favored 'General case' 0 C--N 1.317 -0.841 0 N-CA-C 108.079 -1.082 . . . . 11.720000000000001 108.079 -179.45 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 6' ' ' TYR . . . . . . . . . . . . . 13.1 m-85 -126.12 122.71 36.51 Favored 'General case' 0 CA--C 1.511 -0.525 0 C-N-CA 124.071 0.949 . . . . 4.5999999999999996 108.92 -177.796 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 7' ' ' LEU . . . . . . . . . . . . . 2.2 pt? . . . . . 0 CA--C 1.479 -1.774 0 N-CA-C 114.071 1.137 . . . . 18.809999999999999 114.071 173.976 . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 8' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 9' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 10' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_