data_1dk9_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1dk9 _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.528 2.144 0 O4'-C1'-C2' 102.593 -3.188 . . . . 1.95 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DA' . . . . . 0.462 ' C2 ' ' C2 ' ' A' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.536 3.109 1 O4'-C1'-C2' 101.47 -4.209 . . . . 1.62 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DT' . . . . . 0.462 ' C2 ' ' C2 ' ' A' ' 2' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.334 1 P-O3'-C3' 125.778 5.065 . . . . 1.48 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DG' . . . . . 0.407 ' C2 ' ' C2 ' ' B' ' 16' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.533 2.715 1 O4'-C1'-N19 111.917 5.146 . . . . 1.73 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.483 -3.454 3 O4'-C1'-N19 112.912 6.39 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.479 -3.877 2 O4'-C1'-N19 112.098 5.372 . . . . 1.47 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.537 3.309 1 P-O3'-C3' 124.523 4.019 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DA' . . . . . 0.436 ' C2 ' ' C2 ' ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.607 1 O4'-C1'-N19 103.234 -5.708 . . . . 1.44 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DC' . . . . . 0.436 ' C2 ' ' C2 ' ' A' ' 8' ' ' ' DA' . . . . . . . . 0 P--O5' 1.616 2.327 4 O4'-C1'-N19 114.228 8.034 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 10' ' ' ' DG' . . . . . 0.504 ' H8 ' " O5'" ' B' ' 10' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.539 3.512 0 C4'-C3'-C2' 100.26 -2.94 . . . . 1.83 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 11' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.544 4.088 3 O4'-C1'-N19 116.024 10.28 . . . . 1.54 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' DA' . . . . . 0.457 ' C2 ' ' C2 ' ' B' ' 13' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.482 -3.618 0 O4'-C1'-N19 110.2 2.999 . . . . 1.41 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 13' ' ' ' DC' . . . . . 0.457 ' C2 ' ' C2 ' ' B' ' 12' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.484 -3.43 1 O4'-C1'-N19 111.824 5.03 . . . . 1.52 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 14' ' ' ' DT' . . . . . 0.513 ' C2 ' ' C5 ' ' B' ' 15' ' ' ' DC' . . . . . . . . 0 P--O5' 1.621 2.785 1 C4'-C3'-C2' 99.087 -4.113 . . . . 1.48 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 15' ' ' ' DC' . . . . . 0.513 ' C5 ' ' C2 ' ' B' ' 14' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.537 3.298 2 P-O3'-C3' 125.258 4.632 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 16' ' ' ' DA' . . . . . 0.5 ' C2 ' ' C2 ' ' B' ' 17' ' ' ' DT' . . . . . . . . 1 C5'--C4' 1.544 4.1 1 P-O3'-C3' 126.034 5.278 . . . . 1.44 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 17' ' ' ' DT' . . . . . 0.5 ' C2 ' ' C2 ' ' B' ' 16' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.532 2.637 1 P-O3'-C3' 125.336 4.697 . . . . 1.56 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 18' ' ' ' DG' . . . . . 0.435 ' C8 ' ' C2 ' ' B' ' 17' ' ' ' DT' . . . . . . . . 0 P--O5' 1.618 2.455 2 P-O3'-C3' 124.526 4.021 . . . . 1.56 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.528 2.144 0 O4'-C1'-C2' 102.593 -3.188 . . . . 1.5600000000000001 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DA' . . . . . 0.462 ' C2 ' ' C2 ' ' A' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.536 3.109 1 O4'-C1'-C2' 101.47 -4.209 . . . . 1.6200000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DT' . . . . . 0.462 ' C2 ' ' C2 ' ' A' ' 2' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.334 1 P-O3'-C3' 125.778 5.065 . . . . 1.48 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DG' . . . . . 0.407 ' C2 ' ' C2 ' ' B' ' 16' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.533 2.715 1 O4'-C1'-N19 111.917 5.146 . . . . 1.73 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.483 -3.454 3 O4'-C1'-N19 112.912 6.39 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' DG' . . . . . 0.443 " C2'" ' H71' ' A' ' 7' ' ' ' DT' . . . . . . . . 0 C3'--C2' 1.479 -3.877 2 O4'-C1'-N19 112.098 5.372 . . . . 1.47 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DT' . . . . . 0.443 ' H71' " C2'" ' A' ' 6' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.309 1 P-O3'-C3' 124.523 4.019 . . . . 1.45 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DA' . . . . . 0.436 ' C2 ' ' C2 ' ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.607 1 O4'-C1'-N19 103.234 -5.708 . . . . 1.4399999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DC' . . . . . 0.436 ' C2 ' ' C2 ' ' A' ' 8' ' ' ' DA' . . . . . . . . 0 P--O5' 1.616 2.327 4 O4'-C1'-N19 114.228 8.034 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 10' ' ' ' DG' . . . . . 0.496 HO5' ' H8 ' ' B' ' 10' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.539 3.512 0 C4'-C3'-C2' 100.26 -2.94 . . . . 1.5 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 11' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.544 4.088 3 O4'-C1'-N19 116.024 10.28 . . . . 1.54 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' DA' . . . . . 0.457 ' C2 ' ' C2 ' ' B' ' 13' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.482 -3.618 0 O4'-C1'-N19 110.2 2.999 . . . . 1.4099999999999999 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 13' ' ' ' DC' . . . . . 0.493 " H2'" ' H71' ' B' ' 14' ' ' ' DT' . . . . . . . . 0 C3'--C2' 1.484 -3.43 1 O4'-C1'-N19 111.824 5.03 . . . . 1.52 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 14' ' ' ' DT' . . . . . 0.513 ' C2 ' ' C5 ' ' B' ' 15' ' ' ' DC' . . . . . . . . 0 P--O5' 1.621 2.785 1 C4'-C3'-C2' 99.087 -4.113 . . . . 1.48 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 15' ' ' ' DC' . . . . . 0.513 ' C5 ' ' C2 ' ' B' ' 14' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.537 3.298 2 P-O3'-C3' 125.258 4.632 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 16' ' ' ' DA' . . . . . 0.5 ' C2 ' ' C2 ' ' B' ' 17' ' ' ' DT' . . . . . . . . 1 C5'--C4' 1.544 4.1 1 P-O3'-C3' 126.034 5.278 . . . . 1.4399999999999999 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 17' ' ' ' DT' . . . . . 0.5 ' C2 ' ' C2 ' ' B' ' 16' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.532 2.637 1 P-O3'-C3' 125.336 4.697 . . . . 1.5600000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 18' ' ' ' DG' . . . . . 0.435 ' C8 ' ' C2 ' ' B' ' 17' ' ' ' DT' . . . . . . . . 0 P--O5' 1.618 2.455 2 P-O3'-C3' 124.526 4.021 . . . . 1.52 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.528 2.144 0 O4'-C1'-C2' 102.593 -3.188 . . . . 1.5600000000000001 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DA' . . . . . 0.462 ' C2 ' ' C2 ' ' A' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.536 3.109 1 O4'-C1'-C2' 101.47 -4.209 . . . . 1.6200000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DT' . . . . . 0.462 ' C2 ' ' C2 ' ' A' ' 2' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.334 1 P-O3'-C3' 125.778 5.065 . . . . 1.48 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DG' . . . . . 0.407 ' C2 ' ' C2 ' ' B' ' 16' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.533 2.715 1 O4'-C1'-N19 111.917 5.146 . . . . 1.73 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.483 -3.454 3 O4'-C1'-N19 112.912 6.39 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' DG' . . . . . 0.443 " C2'" ' H71' ' A' ' 7' ' ' ' DT' . . . . . . . . 0 C3'--C2' 1.479 -3.877 2 O4'-C1'-N19 112.098 5.372 . . . . 1.47 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DT' . . . . . 0.443 ' H71' " C2'" ' A' ' 6' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.309 1 P-O3'-C3' 124.523 4.019 . . . . 1.45 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DA' . . . . . 0.436 ' C2 ' ' C2 ' ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.607 1 O4'-C1'-N19 103.234 -5.708 . . . . 1.4399999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DC' . . . . . 0.436 ' C2 ' ' C2 ' ' A' ' 8' ' ' ' DA' . . . . . . . . 0 P--O5' 1.616 2.327 4 O4'-C1'-N19 114.228 8.034 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 10' ' ' ' DG' . . . . . 0.496 HO5' ' H8 ' ' B' ' 10' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.539 3.512 0 C4'-C3'-C2' 100.26 -2.94 . . . . 1.5 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 11' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.544 4.088 3 O4'-C1'-N19 116.024 10.28 . . . . 1.54 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' DA' . . . . . 0.457 ' C2 ' ' C2 ' ' B' ' 13' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.482 -3.618 0 O4'-C1'-N19 110.2 2.999 . . . . 1.4099999999999999 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 13' ' ' ' DC' . . . . . 0.493 " H2'" ' H71' ' B' ' 14' ' ' ' DT' . . . . . . . . 0 C3'--C2' 1.484 -3.43 1 O4'-C1'-N19 111.824 5.03 . . . . 1.52 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 14' ' ' ' DT' . . . . . 0.513 ' C2 ' ' C5 ' ' B' ' 15' ' ' ' DC' . . . . . . . . 0 P--O5' 1.621 2.785 1 C4'-C3'-C2' 99.087 -4.113 . . . . 1.48 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 15' ' ' ' DC' . . . . . 0.513 ' C5 ' ' C2 ' ' B' ' 14' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.537 3.298 2 P-O3'-C3' 125.258 4.632 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 16' ' ' ' DA' . . . . . 0.5 ' C2 ' ' C2 ' ' B' ' 17' ' ' ' DT' . . . . . . . . 1 C5'--C4' 1.544 4.1 1 P-O3'-C3' 126.034 5.278 . . . . 1.4399999999999999 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 17' ' ' ' DT' . . . . . 0.5 ' C2 ' ' C2 ' ' B' ' 16' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.532 2.637 1 P-O3'-C3' 125.336 4.697 . . . . 1.5600000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 18' ' ' ' DG' . . . . . 0.435 ' C8 ' ' C2 ' ' B' ' 17' ' ' ' DT' . . . . . . . . 0 P--O5' 1.618 2.455 2 P-O3'-C3' 124.526 4.021 . . . . 1.52 . . . . . . . . . . 2 2 . 1 stop_ save_