data_1dk6_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1dk6 _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.531 2.5 0 O4'-C1'-C2' 101.881 -3.836 . . . . 1.61 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.49 -2.826 3 P-O3'-C3' 125.525 4.854 . . . . 1.73 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.837 1 P-O3'-C3' 125.908 5.173 . . . . 2.25 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.566 3 O4'-C1'-N19 111.814 5.018 . . . . 1.46 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.024 1 P-O3'-C3' 126.589 5.741 . . . . 1.49 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.528 2.183 0 P-O3'-C3' 123.77 3.392 . . . . 1.58 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.543 4.013 1 P-O3'-C3' 126.038 5.281 . . . . 1.39 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DA' . . . . . 0.405 ' C4 ' ' C6 ' ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.535 3.042 1 P-O3'-C3' 124.697 4.164 . . . . 1.32 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DC' . . . . . 0.405 ' C6 ' ' C4 ' ' A' ' 8' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.531 2.489 1 O4'-C1'-N19 115.431 9.539 . . . . 1.43 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 10' ' ' ' DG' . . . . . 0.439 " H2'" ' H71' ' B' ' 11' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.529 2.294 1 C3'-C2'-C1' 108.405 4.075 . . . . 0.65 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 11' ' ' ' DT' . . . . . 0.439 ' H71' " H2'" ' B' ' 10' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.311 0 P-O3'-C3' 124.182 3.735 . . . . 1.53 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.538 3.361 2 P-O3'-C3' 125.878 5.149 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 13' ' ' ' DC' . . . . . 0.524 H2'' ' C2 ' ' B' ' 14' ' ' NP3 . . . . . . . . 0 C3'--C2' 1.487 -3.119 1 O4'-C1'-N19 113.337 6.921 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 14' ' ' NP3 . . . . . 0.524 ' C2 ' H2'' ' B' ' 13' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 15' ' ' ' DC' . . . . . 0.665 H2'' " O5'" ' B' ' 16' ' ' ' DA' . . . . . . . . 0 P--O5' 1.624 3.083 3 O4'-C1'-N19 112.74 6.175 . . . . 1.67 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 16' ' ' ' DA' . . . . . 0.665 " O5'" H2'' ' B' ' 15' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.539 3.506 2 P-O3'-C3' 126.374 5.562 . . . . 2.09 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 17' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.88 1 P-O3'-C3' 125.358 4.715 . . . . 2.31 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 18' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.626 3.252 1 O4'-C1'-C2' 101.462 -4.216 . . . . 2.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.531 2.5 0 O4'-C1'-C2' 101.881 -3.836 . . . . 1.6100000000000001 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.49 -2.826 3 P-O3'-C3' 125.525 4.854 . . . . 1.73 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.837 1 P-O3'-C3' 125.908 5.173 . . . . 2.25 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.566 3 O4'-C1'-N19 111.814 5.018 . . . . 1.46 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.024 1 P-O3'-C3' 126.589 5.741 . . . . 1.49 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.528 2.183 0 P-O3'-C3' 123.77 3.392 . . . . 1.5800000000000001 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.543 4.013 1 P-O3'-C3' 126.038 5.281 . . . . 1.3899999999999999 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DA' . . . . . 0.405 ' C4 ' ' C6 ' ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.535 3.042 1 P-O3'-C3' 124.697 4.164 . . . . 1.3200000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DC' . . . . . 0.405 ' C6 ' ' C4 ' ' A' ' 8' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.531 2.489 1 O4'-C1'-N19 115.431 9.539 . . . . 1.4299999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 10' ' ' ' DG' . . . . . 0.439 H2'' " O5'" ' B' ' 11' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.529 2.294 1 C3'-C2'-C1' 108.405 4.075 . . . . 0.62 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 11' ' ' ' DT' . . . . . 0.439 " O5'" H2'' ' B' ' 10' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.311 0 P-O3'-C3' 124.182 3.735 . . . . 1.53 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.538 3.361 2 P-O3'-C3' 125.878 5.149 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 13' ' ' ' DC' . . . . . 0.627 H2'' ' C2 ' ' B' ' 14' ' ' NP3 . . . . . . . . 0 C3'--C2' 1.487 -3.119 1 O4'-C1'-N19 113.337 6.921 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 14' ' ' NP3 . . . . . 0.627 ' C2 ' H2'' ' B' ' 13' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 15' ' ' ' DC' . . . . . 0.509 H2'' " O5'" ' B' ' 16' ' ' ' DA' . . . . . . . . 0 P--O5' 1.624 3.083 3 O4'-C1'-N19 112.74 6.175 . . . . 1.6200000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 16' ' ' ' DA' . . . . . 0.509 " O5'" H2'' ' B' ' 15' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.539 3.506 2 P-O3'-C3' 126.374 5.562 . . . . 2.0899999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 17' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.88 1 P-O3'-C3' 125.358 4.715 . . . . 2.3100000000000001 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 18' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.626 3.252 1 O4'-C1'-C2' 101.462 -4.216 . . . . 2.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.531 2.5 0 O4'-C1'-C2' 101.881 -3.836 . . . . 1.6100000000000001 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.49 -2.826 3 P-O3'-C3' 125.525 4.854 . . . . 1.73 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.837 1 P-O3'-C3' 125.908 5.173 . . . . 2.25 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.566 3 O4'-C1'-N19 111.814 5.018 . . . . 1.46 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.024 1 P-O3'-C3' 126.589 5.741 . . . . 1.49 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.528 2.183 0 P-O3'-C3' 123.77 3.392 . . . . 1.5800000000000001 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.543 4.013 1 P-O3'-C3' 126.038 5.281 . . . . 1.3899999999999999 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DA' . . . . . 0.405 ' C4 ' ' C6 ' ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.535 3.042 1 P-O3'-C3' 124.697 4.164 . . . . 1.3200000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DC' . . . . . 0.405 ' C6 ' ' C4 ' ' A' ' 8' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.531 2.489 1 O4'-C1'-N19 115.431 9.539 . . . . 1.4299999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 10' ' ' ' DG' . . . . . 0.439 H2'' " O5'" ' B' ' 11' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.529 2.294 1 C3'-C2'-C1' 108.405 4.075 . . . . 0.62 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 11' ' ' ' DT' . . . . . 0.439 " O5'" H2'' ' B' ' 10' ' ' ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.311 0 P-O3'-C3' 124.182 3.735 . . . . 1.53 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.538 3.361 2 P-O3'-C3' 125.878 5.149 . . . . 1.45 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 13' ' ' ' DC' . . . . . 0.627 H2'' ' C2 ' ' B' ' 14' ' ' NP3 . . . . . . . . 0 C3'--C2' 1.487 -3.119 1 O4'-C1'-N19 113.337 6.921 . . . . 1.46 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 14' ' ' NP3 . . . . . 0.627 ' C2 ' H2'' ' B' ' 13' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 15' ' ' ' DC' . . . . . 0.509 H2'' " O5'" ' B' ' 16' ' ' ' DA' . . . . . . . . 0 P--O5' 1.624 3.083 3 O4'-C1'-N19 112.74 6.175 . . . . 1.6200000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 16' ' ' ' DA' . . . . . 0.509 " O5'" H2'' ' B' ' 15' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.539 3.506 2 P-O3'-C3' 126.374 5.562 . . . . 2.0899999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 17' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.88 1 P-O3'-C3' 125.358 4.715 . . . . 2.3100000000000001 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 18' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.626 3.252 1 O4'-C1'-C2' 101.462 -4.216 . . . . 2.23 . . . . . . . . . . 1 1 . 1 stop_ save_