BMRB Entry 5973

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5973

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Title:
Solution Structure of Dengue Virus Capsid Protein Reveals a New Fold
Deposition date:
2003-10-15
Original release date:
2004-04-07
Authors:
Ma, Lixin; Jones, Christopher; Groesch, Teresa; Kuhn, Richard; Post, Carol
Citation:

Citation: Ma, Lixin; Jones, Christopher; Groesch, Teresa; Kuhn, Richard; Post, Carol. "Solution Structure of Dengue Virus Capsid Protein Reveals another Fold"  Proc. Natl. Acad. Sci. U. S. A. 101, 3414-3419 (2004).
PubMed: 14993605

Assembly members:

Assembly members:
capsid protein of flavivirus, polymer, 100 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Dengue virus   Taxonomy ID: 12637   Superkingdom: Viruses   Kingdom: not available   Genus/species: Flavivirus dengue virus

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
capsid protein of flavivirus: MNDQRKKARNTPFNMLKRER NRVSTVQQLTKRFSLGMLQG RGPLKLFMALVAFLRFLTIP PTAGILKRWGTIKKSKAINV LRGFRKEIGRMLNILNRRRR

Data sets:
Data typeCount
1H chemical shifts618
13C chemical shifts394
15N chemical shifts104

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1DEN2C subunit A1
2DEN2C subunit B1

Entities:

Entity 1, DEN2C subunit A 100 residues - Formula weight is not available

1   METASNASPGLNARGLYSLYSALAARGASN
2   THRPROPHEASNMETLEULYSARGGLUARG
3   ASNARGVALSERTHRVALGLNGLNLEUTHR
4   LYSARGPHESERLEUGLYMETLEUGLNGLY
5   ARGGLYPROLEULYSLEUPHEMETALALEU
6   VALALAPHELEUARGPHELEUTHRILEPRO
7   PROTHRALAGLYILELEULYSARGTRPGLY
8   THRILELYSLYSSERLYSALAILEASNVAL
9   LEUARGGLYPHEARGLYSGLUILEGLYARG
10   METLEUASNILELEUASNARGARGARGARG

Samples:

13C-denC: capsid protein of flavivirus, [U-13C; U-15N], 1.6 mM

15N-denC: capsid protein of flavivirus, [U-15N], 2.0 – 4.0 mM

Ex-cond_1: pH: 6.0; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
HNCACBnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
C(CO)NHnot availablenot availablenot available
HC(CO)NHnot availablenot availablenot available
HCCHTOCSYnot availablenot availablenot available
HSQCnot availablenot availablenot available
hbCBcgcdHDnot availablenot availablenot available
hbCBcgcdHDHEnot availablenot availablenot available

Software:

NMRPipe - data process

Sparky - peak assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ BAA00255 BAD36758 BAD36759 BAD36760 BAD42415
EMBL CAA36004 CAA36005 CAD31751 CAI92123 CAR65133
GB AAA42941 AAA42942 AAA42961 AAA42962 AAA73185
REF NP_056776 NP_739581 NP_739591
SP P07564 P12823 P14337 P14340 P29990
AlphaFold P07564 P12823 P14337 P14340 P29990

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks