BMRB Entry 52973

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52973

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Title:
1H,15N.13C NMR backbone assignments for human Nur77 ligand-binding domain (LBD)
Deposition date:
2025-03-18
Original release date:
2025-04-20
Authors:
Yu, Xiaoyu; Kojetin, Douglas
Citation:

Citation: Yu, Xiaoyu; He, Yuanjun; Kamenecka, Theodore; Kojetin, Douglas. "Towards a unified molecular mechanism for ligand activation of NR4A-RXR heterodimers"  .

Assembly members:

Assembly members:
entity_1, polymer, 243 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET45b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GPDASPANLLTSLVRAHLDS GPSTAKLDYSKFQELVLPHF GKEDAGDVQQFYDLLSGSLE VIRKWAEKIPGFAELSPADQ DLLLESAFLELFILRLAYRS KPGEGKLIFCSGLVLHRLQC ARGFGDWIDSILAFSRSLHS LLVDVPAFACLSALVLITDR HGLQEPRRVEELQNRIASCL KEHVAAVAGEPQPASCLSRL LGKLPELRTLCTQGLQRIFY LKLEDLVPPPPIIDKIFMDT LPF

Data sets:
Data typeCount
13C chemical shifts649
15N chemical shifts193
1H chemical shifts250

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Nur77 LBD1

Entities:

Entity 1, Nur77 LBD 243 residues - Formula weight is not available

1   GLYPROASPALASERPROALAASNLEULEU
2   THRSERLEUVALARGALAHISLEUASPSER
3   GLYPROSERTHRALALYSLEUASPTYRSER
4   LYSPHEGLNGLULEUVALLEUPROHISPHE
5   GLYLYSGLUASPALAGLYASPVALGLNGLN
6   PHETYRASPLEULEUSERGLYSERLEUGLU
7   VALILEARGLYSTRPALAGLULYSILEPRO
8   GLYPHEALAGLULEUSERPROALAASPGLN
9   ASPLEULEULEUGLUSERALAPHELEUGLU
10   LEUPHEILELEUARGLEUALATYRARGSER
11   LYSPROGLYGLUGLYLYSLEUILEPHECYS
12   SERGLYLEUVALLEUHISARGLEUGLNCYS
13   ALAARGGLYPHEGLYASPTRPILEASPSER
14   ILELEUALAPHESERARGSERLEUHISSER
15   LEULEUVALASPVALPROALAPHEALACYS
16   LEUSERALALEUVALLEUILETHRASPARG
17   HISGLYLEUGLNGLUPROARGARGVALGLU
18   GLULEUGLNASNARGILEALASERCYSLEU
19   LYSGLUHISVALALAALAVALALAGLYGLU
20   PROGLNPROALASERCYSLEUSERARGLEU
21   LEUGLYLYSLEUPROGLULEUARGTHRLEU
22   CYSTHRGLNGLYLEUGLNARGILEPHETYR
23   LEULYSLEUGLUASPLEUVALPROPROPRO
24   PROILEILEASPLYSILEPHEMETASPTHR
25   LEUPROPHE

Samples:

sample_1: Nur77 LBD, [U-100% 13C; U-100% 15N; U-80% 2H], 3.7 mM

sample_conditions_1: ionic strength: 70 mM; pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N TROSYsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HN(CA)CBsample_1isotropicsample_conditions_1
3D HN(COCA)CBsample_1isotropicsample_conditions_1
3D CCH-TOCSYsample_1isotropicsample_conditions_1

Software:

TOPSPIN v3 - collection

NMRViewJ - chemical shift assignment

NMR spectrometers:

  • Bruker AVANCE III 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks