BMRB Entry 5031

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5031
MolProbity Validation Chart

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Title:
Sequence-specific 1H, 13C and 15N resonance assignments of the N-terminal, 135-residue domain of KaiA, a clock protein from Synechococcus elongatus
Deposition date:
2001-05-24
Original release date:
2003-01-13
Authors:
Vakonakis, Ioannis; Risinger, Aaron; Latham, Michael; Williams, Stanly; Golden, Susan; LiWang, Andy
Citation:

Citation: Vakonakis, Ioannis; Risinger, Aaron; Latham, Michael; Williams, Stanly; Golden, Susan; LiWang, Andy. "Letter to the Editor: Sequence-specific 1H, 13C and 15N resonance assignments of the N-terminal, 135-residue domain of KaiA, a clock protein from Synechococcus elongatus"  J. Biomol. NMR 21, 179-180 (2001).

Assembly members:

Assembly members:
KaiA, polymer, 135 residues, 15066 Da.

Natural source:

Natural source:   Common Name: Synechococcus elongatus   Taxonomy ID: 32046   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Synechococcus elongatus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
KaiA: MLSQIAICIWVESTAILQDC QRALSADRYQLQVCESGEML LEYAQTHRDQIDCLILVAAN PSFRAVVQQLCFEGVVVPAI VVGDRDSEDPDEPAKEQLYH SAELHLGIHQLEQLPYQVDA ALAEFLRLAPVETMA

Data sets:
Data typeCount
1H chemical shifts959
13C chemical shifts596
15N chemical shifts147

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1KaiA N-terminus1

Entities:

Entity 1, KaiA N-terminus 135 residues - 15066 Da.

1   METLEUSERGLNILEALAILECYSILETRP
2   VALGLUSERTHRALAILELEUGLNASPCYS
3   GLNARGALALEUSERALAASPARGTYRGLN
4   LEUGLNVALCYSGLUSERGLYGLUMETLEU
5   LEUGLUTYRALAGLNTHRHISARGASPGLN
6   ILEASPCYSLEUILELEUVALALAALAASN
7   PROSERPHEARGALAVALVALGLNGLNLEU
8   CYSPHEGLUGLYVALVALVALPROALAILE
9   VALVALGLYASPARGASPSERGLUASPPRO
10   ASPGLUPROALALYSGLUGLNLEUTYRHIS
11   SERALAGLULEUHISLEUGLYILEHISGLN
12   LEUGLUGLNLEUPROTYRGLNVALASPALA
13   ALALEUALAGLUPHELEUARGLEUALAPRO
14   VALGLUTHRMETALA

Samples:

sample_KaiA-135: KaiA, [U-99% 13C; U-99% 15N], 2.9 – 3.4 mM

Ex-cond_1: pH: 6.4; temperature: 298 K; ionic strength: 0.22 M

Experiments:

NameSampleSample stateSample conditions
15N HSQCnot availablenot availablenot available
HNHAnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
CBCANHnot availablenot availablenot available
C(CO)NHnot availablenot availablenot available
H(CCO)NHnot availablenot availablenot available
HBHACONHnot availablenot availablenot available
HCCH-COSYnot availablenot availablenot available

Software:

NMRPipe v1.8 rev 2001.030.21.27 - NMR data processing

PIPP v4.2.6 - Spectra visualization

STAPP v4.2.6 - Spin system creation, partial sequence specific assignments

NMR spectrometers:

  • Varian Inova 600 MHz

Related Database Links:

PDB
DBJ BAA37101 BAD78522
GB AAM82684 ABB57248 AJD58238
REF WP_011242646 WP_011377921 YP_171042 YP_400235
SP Q79PF6
AlphaFold Q79PF6 Q79PF6

Download HSQC peak lists in one of the following formats:
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SPARKY: Backbone or all simulated peaks