BMRB Entry 4109

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4109

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Sequence Specific 1H, 13C and 15N Resonance Assignment of Rat CD2 Domain 1

Deposition date:

1998-02-18

Original release date:

1999-02-02

Authors:

Chen, Ho; Pfuhl, Mark; Davis, Ben; Driscoll, Paul

Citation:

Citation: Chen, Ho; Pfuhl, Mark; Davis, Ben; Driscoll, Paul. "Sequence Specific 1H, 13C and 15N Resonance Assignment of Rat CD2 Domain 1" J. Biomol. NMR 12, 457-458 (1998).

Assembly members:

Assembly members:
rat CD2 domain 1, polymer, 100 residues, 12000 Da.

Natural source:

Natural source: Common Name: rat Taxonomy ID: 10117 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rattus rattus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
rat CD2 domain 1: MRDSGTVWGALGHGINLNIP NFQMTDDIDEVRWERGSTLV AEFKRKMKPFLKSGAFEILA NGDLKIKNLTRDDSGTYNVT VYSTNGTRILNKALDLRILE

Data sets:

assigned_chemical_shifts

Data type	Count
13C chemical shifts	1055
15N chemical shifts	302
1H chemical shifts	1921

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CD2d1	1

Entities:

Entity 1, CD2d1 100 residues - 12000 Da.

1	MET	ARG	ASP	SER	GLY	THR	VAL	TRP	GLY	ALA
2	LEU	GLY	HIS	GLY	ILE	ASN	LEU	ASN	ILE	PRO
3	ASN	PHE	GLN	MET	THR	ASP	ASP	ILE	ASP	GLU
4	VAL	ARG	TRP	GLU	ARG	GLY	SER	THR	LEU	VAL
5	ALA	GLU	PHE	LYS	ARG	LYS	MET	LYS	PRO	PHE
6	LEU	LYS	SER	GLY	ALA	PHE	GLU	ILE	LEU	ALA
7	ASN	GLY	ASP	LEU	LYS	ILE	LYS	ASN	LEU	THR
8	ARG	ASP	ASP	SER	GLY	THR	TYR	ASN	VAL	THR
9	VAL	TYR	SER	THR	ASN	GLY	THR	ARG	ILE	LEU
10	ASN	LYS	ALA	LEU	ASP	LEU	ARG	ILE	LEU	GLU

Samples:

sample_one: rat CD2 domain 1, [U96%-13C;U96%-15N], 1.2 mM; phosphate buffer 20 mM

sample_conditions_one: pH: 3.0; temperature: 298 K

sample_conditions_two: pH: 5.0; temperature: 298 K

sample_conditions_three: pH: 7.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	not available	not available	not available
HNCO	not available	not available	not available
HNCACB	not available	not available	not available
HN(CO)CACB	not available	not available	not available
CBCACOCAHA	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
HCCH-COSY	not available	not available	not available
HC(C)CO	not available	not available	not available
1H-15N HSQC	not available	not available	not available
1H-13C CT-HSQC	not available	not available	not available

Software:

NMRPipe - processing of spectra

XEASY - Spectral analysis

NMR spectrometers:

Varian UnityPlus 600 MHz

PDB	1A64 1A7B 1CDC 1HNG 1T6W
EMBL	CAA28757
GB	AAH88164 ADI96088 EDL85525
REF	NP_036962
SP	P08921
AlphaFold	P08921

1	MET	ARG	ASP	SER	GLY	THR	VAL	TRP	GLY	ALA
2	LEU	GLY	HIS	GLY	ILE	ASN	LEU	ASN	ILE	PRO
3	ASN	PHE	GLN	MET	THR	ASP	ASP	ILE	ASP	GLU
4	VAL	ARG	TRP	GLU	ARG	GLY	SER	THR	LEU	VAL
5	ALA	GLU	PHE	LYS	ARG	LYS	MET	LYS	PRO	PHE
6	LEU	LYS	SER	GLY	ALA	PHE	GLU	ILE	LEU	ALA
7	ASN	GLY	ASP	LEU	LYS	ILE	LYS	ASN	LEU	THR
8	ARG	ASP	ASP	SER	GLY	THR	TYR	ASN	VAL	THR
9	VAL	TYR	SER	THR	ASN	GLY	THR	ARG	ILE	LEU
10	ASN	LYS	ALA	LEU	ASP	LEU	ARG	ILE	LEU	GLU

1	MET	ARG	ASP	SER	GLY	THR	VAL	TRP	GLY	ALA
2	LEU	GLY	HIS	GLY	ILE	ASN	LEU	ASN	ILE	PRO
3	ASN	PHE	GLN	MET	THR	ASP	ASP	ILE	ASP	GLU
4	VAL	ARG	TRP	GLU	ARG	GLY	SER	THR	LEU	VAL
5	ALA	GLU	PHE	LYS	ARG	LYS	MET	LYS	PRO	PHE
6	LEU	LYS	SER	GLY	ALA	PHE	GLU	ILE	LEU	ALA
7	ASN	GLY	ASP	LEU	LYS	ILE	LYS	ASN	LEU	THR
8	ARG	ASP	ASP	SER	GLY	THR	TYR	ASN	VAL	THR
9	VAL	TYR	SER	THR	ASN	GLY	THR	ARG	ILE	LEU
10	ASN	LYS	ALA	LEU	ASP	LEU	ARG	ILE	LEU	GLU