BMRB Entry 36358

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR36358

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Title:
Solution structure of the sensor domain of the anti-sigma factor RsgI4 in Pseudobacteroides cellulosolvens
Deposition date:
2020-06-30
Original release date:
2025-10-13
Authors:
Dong, S.; Feng, Y.
Citation:

Citation: Dong, Sheng; Chen, Chao; Li, Jie; Liu, Ya-Jun; Bayer, Edward; Lamed, Raphael; Mizrahi, Itzhak; Cui, Qiu; Feng, Yingang. "Unique Fn3-like biosensor in s(I)/anti-s(I) factors for regulatory expression of major cellulosomal scaffoldins in Pseudobacteroides cellulosolvens."  Protein Sci. 33, e5193-e5193 (2024).
PubMed: 39470320

Assembly members:

Assembly members:
Anti-sigma factor RsgI, N-terminal, polymer, 132 residues, 14526.462 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: 398512   Superkingdom: not available   Kingdom: Bacillati   Genus/species: Pseudobacteroides cellulosolvens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli BL21(DE3)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Anti-sigma factor RsgI, N-terminal: MVEIAINPASEITATSAFIS GTVTKFEQSKGFYGSGCNIS LLYWEASNPMHVKVASSISK KDFPADISATIKDLKPHTTY QFKVTVNFYFSSSLQTFKTL ALESKSTSIVSTSTPTPSMP VKVTLEHHHHHH

Data sets:
Data typeCount
13C chemical shifts554
15N chemical shifts127
1H chemical shifts868

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 132 residues - 14526.462 Da.

1   METVALGLUILEALAILEASNPROALASER
2   GLUILETHRALATHRSERALAPHEILESER
3   GLYTHRVALTHRLYSPHEGLUGLNSERLYS
4   GLYPHETYRGLYSERGLYCYSASNILESER
5   LEULEUTYRTRPGLUALASERASNPROMET
6   HISVALLYSVALALASERSERILESERLYS
7   LYSASPPHEPROALAASPILESERALATHR
8   ILELYSASPLEULYSPROHISTHRTHRTYR
9   GLNPHELYSVALTHRVALASNPHETYRPHE
10   SERSERSERLEUGLNTHRPHELYSTHRLEU
11   ALALEUGLUSERLYSSERTHRSERILEVAL
12   SERTHRSERTHRPROTHRPROSERMETPRO
13   VALLYSVALTHRLEUGLUHISHISHISHIS
14   HISHIS

Samples:

sample_1: the sensor domain of RsgI4, [U-13C; U-15N], 1 ± 0.1 mM; sodium azide 0.02 ± 0.001 % w/v; sodium acetate 50 ± 1 mM; DSS 0.01 ± 0.001 % w/v; H2O 90%; D2O, [U-2H], 10%

sample_conditions_1: ionic strength: 50 mM; pH: 5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HBHANHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1

Software:

TopSpin, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRViewJ, Johnson, One Moon Scientific - data analysis

CYANA, Guntert, Mumenthaler and Wuthrich - structure calculation

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

NMR spectrometers:

  • Bruker AVANCE III 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks