BMRB Entry 36323

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR36323

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Title:
Solution structure of the core domain of Fibroblast growth factor 21 (FGF21)
Deposition date:
2020-03-14
Original release date:
2025-10-13
Authors:
Zhu, L.; Zhao, H.; Wang, J.
Citation:

Citation: Zhu, Lei; Zhao, Hongxin; Liu, Juanjuan; Cai, Hao; Wu, Bo; Liu, Zhijun; Zhou, Shu; Liu, Qingsong; Li, Xiaokun; Bao, Bin; Liu, Jian; Dai, Han; Wang, Junfeng. "Dynamic folding modulation generates FGF21 variant against diabetes."  EMBO Rep. 22, e51352-e51352 (2021).
PubMed: 33295692

Assembly members:

Assembly members:
Fibroblast growth factor 21, polymer, 128 residues, 14089.793 Da.

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli K-12   Vector: pET22b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Fibroblast growth factor 21: GQVRQRYLYTDDAQQTEAHL EIREDGTVGGAADQSPESLL QLKALKPGVIQILGVKTSRF LCQRPDGALYGSLHFDPEAC SFRELLLEDGYNVYQSEAHG LPLHLPGNKSPHRDPAPRGP ARFLPLPG

Data sets:
Data typeCount
13C chemical shifts452
15N chemical shifts114
1H chemical shifts733

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 128 residues - 14089.793 Da.

1   GLYGLNVALARGGLNARGTYRLEUTYRTHR
2   ASPASPALAGLNGLNTHRGLUALAHISLEU
3   GLUILEARGGLUASPGLYTHRVALGLYGLY
4   ALAALAASPGLNSERPROGLUSERLEULEU
5   GLNLEULYSALALEULYSPROGLYVALILE
6   GLNILELEUGLYVALLYSTHRSERARGPHE
7   LEUCYSGLNARGPROASPGLYALALEUTYR
8   GLYSERLEUHISPHEASPPROGLUALACYS
9   SERPHEARGGLULEULEULEUGLUASPGLY
10   TYRASNVALTYRGLNSERGLUALAHISGLY
11   LEUPROLEUHISLEUPROGLYASNLYSSER
12   PROHISARGASPPROALAPROARGGLYPRO
13   ALAARGPHELEUPROLEUPROGLY

Samples:

sample_1: FGF21core, [U-99% 15N], 0.5 mM; sodium azide 0.2 % w/v; sodium chloride 100 mM; sodium phosphate 20 mM; H2O 90%; D2O, [U-2H], 10%

sample_2: FGF21core, [U-99% 13C; U-99% 15N], 0.5 mM; sodium azide 0.2 % w/v; sodium chloride 100 mM; sodium phosphate 20 mM; H2O 90%; D2O, [U-2H], 10%

sample_3: FGF21core, [U-99% 13C; U-99% 15N], 0.5 mM; sodium azide 0.2 % w/v; sodium chloride 100 mM; sodium phosphate 20 mM; D2O, [U-2H], 100%

sample_conditions_1: ionic strength: 260 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_2isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_2isotropicsample_conditions_1
3D HNCOsample_2isotropicsample_conditions_1
3D HNCAsample_2isotropicsample_conditions_1
2D 1H-15N HSQCsample_3isotropicsample_conditions_1
3D HNCACBsample_2isotropicsample_conditions_1
3D HN(CO)CAsample_2isotropicsample_conditions_1
3D HN(CA)COsample_2isotropicsample_conditions_1
3D CBCA(CO)NHsample_2isotropicsample_conditions_1
3D HBHA(CO)NHsample_2isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_2isotropicsample_conditions_1
3D 1H-13C NOESYsample_3isotropicsample_conditions_1
3D HCCH-TOCSYsample_3isotropicsample_conditions_1
3D HCCH-COSYsample_3isotropicsample_conditions_1

Software:

TopSpin v3.2, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

Sparky, Goddard - data analysis

Sparky, Goddard - chemical shift assignment

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - chemical shift calculation

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMR spectrometers:

  • Bruker AVANCE III 600 MHz
  • Bruker AVANCE III 850 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks